View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_high_14 (Length: 319)
Name: NF3071_high_14
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 20124662 - 20124470
Alignment:
| Q |
18 |
attatgcatttcttatgtataaatgagttctatataagcataaaattcaccagattgaatactcctttgtagctagtttttaagtgaggttatggatgga |
117 |
Q |
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| T |
20124662 |
attatgcatttcttatgtataaatgagttctatataagcataaaattcaccagattgaatactcctttgtagctagtttttaagtgaggttatggatgga |
20124563 |
T |
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| Q |
118 |
ttgtactggtcacacaaagttcaaaacgatgttaatttaataaataacttttctggttgtaaagttctttaatatgattctctacaattcatt |
210 |
Q |
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| T |
20124562 |
ttgtactggtcacacaaagttcaaaacgatgttaatttaataaataacttttctggttgtaaagttctttaatatgattctctacaattcatt |
20124470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 20124443 - 20124372
Alignment:
| Q |
210 |
ttcttatgtagtatgttaaatagattagataaaattagttttagttaaaaccgatttcaatgtgaaatattt |
281 |
Q |
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| T |
20124443 |
ttcttatgtagtatgttaaatagattagacaaaattagttttagttaaaaccgagttcaatgtaaaatattt |
20124372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 309
Target Start/End: Complemental strand, 9787864 - 9787834
Alignment:
| Q |
279 |
tttggctaaactacacttttcgccccctatg |
309 |
Q |
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| T |
9787864 |
tttggctaaactacacttttcgccccctatg |
9787834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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