View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_high_15 (Length: 287)
Name: NF3071_high_15
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_high_15 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 52447429 - 52447148
Alignment:
| Q |
5 |
ataattctagtgtggttatgtgaaatcctattaagtggaataatgtgtatgcgtagcattcgtggtaaataaaacagaaatagaagtagtttttagtttt |
104 |
Q |
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| T |
52447429 |
ataattctagtgttgttatgtgaaatcctattaagtggaataatgtgtatgcgtagcattcgtggtaaataaaacagaaataaaagtagtttttagtttt |
52447330 |
T |
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| Q |
105 |
attaagctagaaacgcataatcaacttgaacaacaactttttgatgaatctatttgnnnnnnntccataaataaaatctcaaaagagtaactgggagagc |
204 |
Q |
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| T |
52447329 |
attaagctaaaaacgcataatcaacttgaacaacaactttttgatgaatctatttg-aaaaaatccataaataaaatctcaaaagagtaattgagagagc |
52447231 |
T |
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| Q |
205 |
ttccaaatcaacatgcacaacaacaatcaccattaagcaaccaagaacttcactctgcaacaacacagagcaatacaacacaa |
287 |
Q |
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| T |
52447230 |
ttccaaatgaacatgcacaacagtaatcaccagcaagcaaccaataacttcactatgcaacaacacaaagcaatacaacacaa |
52447148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 36 - 287
Target Start/End: Complemental strand, 52446462 - 52446212
Alignment:
| Q |
36 |
taagtggaataatgtgtatgcgtagcattcgtggtaaataaaacagaaatagaagtagtttttagttttattaagctagaaacgcataatcaacttgaac |
135 |
Q |
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| T |
52446462 |
taagtgaaataatgtgtatgcgtagcatttgtggtaaataaaacagaaatagaagtagtttctagttttactaagctagaaacgcataagcaacttgaac |
52446363 |
T |
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| Q |
136 |
aacaactttttgatgaatctatttgnnnnnnntccataaataaaatctcaaaagagtaactgggagagcttccaaatcaacatgcacaacaacaatcacc |
235 |
Q |
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| T |
52446362 |
aacaactttttgatcaatctctttgaaaaaa-tctagaaatcaaatctcaaaagagtaactgggagaacttccaaatcaacatgcacaacaataatcacc |
52446264 |
T |
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| Q |
236 |
attaagcaaccaagaacttcactctgcaacaacacagagcaatacaacacaa |
287 |
Q |
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| T |
52446263 |
attaagcaaccaagaacttcactctgcaacaacacaaagcaatacaacacaa |
52446212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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