View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_high_25 (Length: 242)
Name: NF3071_high_25
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_high_25 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 45874420 - 45874179
Alignment:
| Q |
1 |
tcataacatacttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggctttgaagaag |
100 |
Q |
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| T |
45874420 |
tcataacatacttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggctttgaagaag |
45874321 |
T |
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| Q |
101 |
tggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccacgtatcattcatagggatctcaattgcagcaatgtgtttatcaatggaa |
200 |
Q |
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| T |
45874320 |
tggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccatgtatcattcatagagatctcaattgcagcaatgtgtttatcaatggaa |
45874221 |
T |
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| Q |
201 |
atactggccaggtatatttcctcctccttttgtaattttcat |
242 |
Q |
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| T |
45874220 |
atactggccaggtaaatttcctcctccttttgtaattttcat |
45874179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 22263850 - 22263633
Alignment:
| Q |
2 |
cataacatacttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggctttgaagaagt |
101 |
Q |
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||||||| ||| |||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
22263850 |
cataacacactgaatttcatcactgaggtttgtacaagtgggaatttgagggagtataggaagaaacataaacatgtttctcttaaggctttgaagaagt |
22263751 |
T |
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| Q |
102 |
ggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccacgtatcattcatagggatctcaattgcagcaatgtgtttatcaatggaaa |
201 |
Q |
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| T |
22263750 |
ggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcatccatagagacctcaattgcagtaatgtgtttgtcaatggaaa |
22263651 |
T |
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| Q |
202 |
tactggccaggtatattt |
219 |
Q |
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| T |
22263650 |
tactggccaggtaaattt |
22263633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 22269990 - 22270207
Alignment:
| Q |
2 |
cataacatacttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggctttgaagaagt |
101 |
Q |
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||||||| ||| |||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
22269990 |
cataacacactgaatttcatcactgaggtttgtacaagtgggaatttgagggagtataggaagaaacataaacatgtttctcttaaggctttgaagaagt |
22270089 |
T |
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| Q |
102 |
ggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccacgtatcattcatagggatctcaattgcagcaatgtgtttatcaatggaaa |
201 |
Q |
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| T |
22270090 |
ggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcatccatagagacctcaattgcagtaatgtgtttgtcaatggaaa |
22270189 |
T |
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| Q |
202 |
tactggccaggtatattt |
219 |
Q |
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| T |
22270190 |
tactggccaggtaaattt |
22270207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 10083053 - 10082840
Alignment:
| Q |
1 |
tcataacatacttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggctttgaagaag |
100 |
Q |
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|||||| | ||| |||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||| || | |||||||||||| |
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| T |
10083053 |
tcataatacactgaatttcatcactgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagctttgaagaag |
10082954 |
T |
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| Q |
101 |
tggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccacgtatcattcatagggatctcaattgcagcaatgtgtttatcaatggaa |
200 |
Q |
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||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||| ||||| ||| |||| |||| |
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| T |
10082953 |
tggtctaagcagattttgaaagggttgaattatttgcatgtgcatgatccttgtatcattcatagagacctcaattgcagtaatgtttttgtcaacggaa |
10082854 |
T |
|
| Q |
201 |
atactggccaggta |
214 |
Q |
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| || || |||||| |
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| T |
10082853 |
acaccggtcaggta |
10082840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 41245808 - 41245605
Alignment:
| Q |
11 |
cttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggctttgaagaagtggtctaagc |
110 |
Q |
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|||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||| |||||||| ||||| | || |
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| T |
41245808 |
cttaatttcatcaccgaggtttgtacaagtgggaatttgagagagtataggaagaaacatagacatgtttctatgaaggcattgaagaaatggtcaaggc |
41245709 |
T |
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| Q |
111 |
aaattttggaagggttgaattatttgcatgttcatgatccacgtatcattcatagggatctcaattgcagcaatgtgtttatcaatggaaatactggcca |
210 |
Q |
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| ||| || ||||||||||||||||||| |||||| || | ||||||||||| |||||||||||||| ||||||||| | ||||| ||| |||||| |
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| T |
41245708 |
agattctgaaagggttgaattatttgcacactcatgagccttgcatcattcatagagatctcaattgcagtaatgtgtttgttaatgggaatgttggcca |
41245609 |
T |
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| Q |
211 |
ggta |
214 |
Q |
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|||| |
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| T |
41245608 |
ggta |
41245605 |
T |
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