View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_high_28 (Length: 237)
Name: NF3071_high_28
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 1223369 - 1223216
Alignment:
| Q |
66 |
cttcgtcaagttggttagtggttagcccacacaccgtaagtatgaagaaatggagatccgaagttccaacttcaacctctatatatcaatattcatgaaa |
165 |
Q |
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| T |
1223369 |
cttcgtcaagttggttagtggctagtccacataccgtaagtatgaagaaatggagatccgaagttccaacttcaacctctatatatcaatattcatgaaa |
1223270 |
T |
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| Q |
166 |
ttatcaattagaccatatttatggaatgaatcggagagtttattttattacaact |
220 |
Q |
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| T |
1223269 |
-taccaattagacaatatttatggaatgaatcggagagtttattttattacaact |
1223216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1223436 - 1223393
Alignment:
| Q |
1 |
ctaattctagtaattactagaaagagaaaaagaatccaactcaaatt |
47 |
Q |
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| T |
1223436 |
ctaattctagtaatta---gaaagagaaaaagagtccaactcaaatt |
1223393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 41960631 - 41960486
Alignment:
| Q |
67 |
ttcgtcaagttggttagtggttagcccacacaccgtaagtatgaagaaatggagatccgaagttccaacttcaacctctatatatcaatattcatgaaat |
166 |
Q |
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| T |
41960631 |
ttcgtcaagttggttagtggctagaccacacaccgtaagtatgaagaaatgaagattcgaagttccaacttcaacctctatatatcaatattcatgaaat |
41960532 |
T |
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| Q |
167 |
tatcaattagaccatatttatggaatgaatcggagagtttatttta |
212 |
Q |
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| T |
41960531 |
tactcattagaccatatttatggaatgaatcgaagagtttatttta |
41960486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41960699 - 41960656
Alignment:
| Q |
1 |
ctaattctagtaattactagaaagagaaaaagaatccaactcaaatt |
47 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41960699 |
ctaattctagtaatta---gaaagagaaaaagaatccaactcaaatt |
41960656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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