View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3071_high_31 (Length: 229)
Name: NF3071_high_31
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_high_31 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 21597552 - 21597760
Alignment:
| Q |
21 |
atagatgtttttcgtgttccactagccgcgactccgttagtgatcaacagaaccataacggctaatggatcaagcatattgaaaccaattttaaaagaat |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| || |||| ||||| |||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
21597552 |
atagatgtttttcgtgttccactagccgcgattccgttagtaattaacaaaaccacaacggctaatggatcaagcaaattgaaaccggttttaaaagaat |
21597651 |
T |
|
| Q |
121 |
tgattcggatccgaaaataatccgaatcgttctatatcattgtagcaaagtaggatgaccatgaacgaccaagaccggcagcaccgacaatagcttcaag |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
21597652 |
cgattctgatccgaaaataatccgaatcgttttttatcattgtggcaaagtaagatgaccatgaacgaccgagaccggcagcaccgacgagagcttcaag |
21597751 |
T |
|
| Q |
221 |
gagaatatt |
229 |
Q |
| |
|
||||||||| |
|
|
| T |
21597752 |
gagaatatt |
21597760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 72 - 229
Target Start/End: Original strand, 11987367 - 11987524
Alignment:
| Q |
72 |
accataacggctaatggatcaagcatattgaaaccaattttaaaagaattgattcggatccgaaaataatccgaatcgttctatatcattgtagcaaagt |
171 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
11987367 |
accataacggctaatggataaagcatattgaaaccaattttaaaagaattgattcggatacgaaaataatccaaatcgtttcttatcattgtagcaaagt |
11987466 |
T |
|
| Q |
172 |
aggatgaccatgaacgaccaagaccggcagcaccgacaatagcttcaaggagaatatt |
229 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11987467 |
aggatgaccatgaacgaccaagaccagcagcaccgacaatagcttcaaggagaatatt |
11987524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University