View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_high_8 (Length: 412)
Name: NF3071_high_8
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 43435607 - 43435217
Alignment:
| Q |
1 |
aaatccatatattaatgtaatgtcgtaattaaggcttcatcagtattgtagtctatgtcagcctaacatttttgtcagaatgtgtgaccttttaatata- |
99 |
Q |
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| T |
43435607 |
aaatccatatattaatgtaatgtcgtaattaaggcttcatcagtattgtagtctatgtcagcctaacatttttgtcagaatgtgtgaccttttaatataa |
43435508 |
T |
|
| Q |
100 |
---tatgttaaatactataccaagtatatgaacatttttggtggtgttaccttacccttaatttggctaaaattcactgtctatatacacaacaatatat |
196 |
Q |
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| T |
43435507 |
gtatatgttaaatactataccaagtatatgaacatttttggtggtgttaccttacccttaatttggctaaaattcactgtctatatacacaacaatatat |
43435408 |
T |
|
| Q |
197 |
gaaagaaattggacagttggagcggttactagagcacctgcttctgttaacaaagttccagctacatgacttgattattgagaaagaatgcacattttca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43435407 |
gaaagaaattggacagttggagcggttactagagcacctgcttctgttaacaaagttccagctacatgacttgattattgagaaagaatgcacattttca |
43435308 |
T |
|
| Q |
297 |
tatattatcctttgctaaagtaattgtatagtataactctgatgcaggtttctttgagaacaatgcacccctttcttatattattatatta |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43435307 |
tatattatcctttgctaaagtaattgtatagtataactctgatgcaggtttctttgagaacaatgcacccctttcttataatattatatta |
43435217 |
T |
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