View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_12 (Length: 377)
Name: NF3071_low_12
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 29662190 - 29662566
Alignment:
| Q |
1 |
tcatcaccttcaaggttttattactcactattgtgctgtcacacagtcataacttgctttaggtgcaaatatgttaacttaattggccaattcaatcgat |
100 |
Q |
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| T |
29662190 |
tcatcaccttcaaggttttattactcactattgtgctgtcacacagtcataacttgctttaggtgcaaatatgttaacttaattggccaattcaatcgat |
29662289 |
T |
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| Q |
101 |
gaaccaagaatgtagacattgtccatctaaatcctaagtaatcaattcattttatagttatgcgaattaatcctatatcgataatagctaatgctcaata |
200 |
Q |
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| T |
29662290 |
gatccaagaatgtagacattgtccatctaaatcctaagtaatcaattcattttatagttatgcgaattaatcctatatcgataatagctaatgctcaata |
29662389 |
T |
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| Q |
201 |
tgnnnnnnnaaaaattgaaatgcgcatcgggtaattcctgcattcgtaactccatgatttcccagtaaaatattgactgtggtgacattagttttcctac |
300 |
Q |
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| T |
29662390 |
tgtttttttaaaaattgaaatgcgcattgggtaattcctgcattcgtaactccatgatttcccagtaaaatattgactgtggtgacattagttttcctac |
29662489 |
T |
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| Q |
301 |
aatcaaaatcaatattgctctttgtgtgtttacttattagcatctactgtatactttgtatttcaagaatctatgtt |
377 |
Q |
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| T |
29662490 |
aatcaaaatcaatattgctctttgtgtgtttacttattagcatctactgtatactttgtatttcaagaatctatgtt |
29662566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 33183620 - 33183432
Alignment:
| Q |
1 |
tcatcaccttcaaggtttta-ttactcactattgtgctgtcacacagtcataacttgctttaggtgcaaatatgtta----acttaattggccaattcaa |
95 |
Q |
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| T |
33183620 |
tcatcaccttcaatgttttagttactcactattgtactg---cacagtcatagcatgctttaggtgcaaagatgttagttaactta-ttcgtcaattcga |
33183525 |
T |
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| Q |
96 |
tcgatgaaccaagaatgtagacattgtccatctaaatcctaagtaatcaattcattttatagttatgcgaattaatcctatatcgataatagcta |
190 |
Q |
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| T |
33183524 |
ttgttggcccaagaatatagatgttgtccatctaaatcctaagtagtcaattcgttcta--gttatgcgaattaatcctatatcgataatagcta |
33183432 |
T |
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