View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3071_low_13 (Length: 373)

Name: NF3071_low_13
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3071_low_13
NF3071_low_13
[»] chr8 (8 HSPs)
chr8 (73-338)||(3603047-3603315)
chr8 (124-216)||(41999973-42000065)
chr8 (128-216)||(45093130-45093218)
chr8 (124-210)||(14769780-14769866)
chr8 (73-116)||(14341847-14341890)
chr8 (124-221)||(9215907-9216004)
chr8 (124-174)||(33372929-33372979)
chr8 (337-373)||(3603401-3603437)
[»] chr2 (3 HSPs)
chr2 (124-216)||(11996061-11996153)
chr2 (124-216)||(42865606-42865698)
chr2 (128-216)||(24126745-24126833)
[»] chr7 (4 HSPs)
chr7 (124-216)||(45034004-45034096)
chr7 (124-216)||(46045596-46045688)
chr7 (123-216)||(38110999-38111092)
chr7 (124-216)||(8035400-8035492)
[»] chr5 (2 HSPs)
chr5 (124-216)||(14024624-14024716)
chr5 (124-216)||(32386177-32386269)
[»] chr4 (3 HSPs)
chr4 (124-216)||(1369123-1369215)
chr4 (124-216)||(28945694-28945786)
chr4 (124-216)||(36859134-36859226)
[»] chr1 (2 HSPs)
chr1 (124-216)||(6293705-6293797)
chr1 (125-216)||(28705680-28705771)
[»] chr3 (1 HSPs)
chr3 (152-223)||(1182170-1182241)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 73 - 338
Target Start/End: Original strand, 3603047 - 3603315
Alignment:
Q  73 ataacaaggagaactaatacaaggacagcaatggtaaatttttcaatctcacaagagtaccaaattccttccaaacatcatcacaattgagcttaactca 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3603047 ataacaaggagaactaatacaaggacagcaatggtaaatttttcaatctcacaagagtaccaaattccttccaaacatcatcacaattgagcttaactca 3603146  T
Q  173 accaatcaaa---ggtggcatccaaccgatgtatatagtttcattttaatgaggcactacaagaaaactggttttagaaaccgaaaaattggtcactaaa 269  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3603147 accaatcaaattaggtggcatccaaccgatgtatatagtttcattttaatgaggcactacaagaaaactagttttagaaaccgaaaaattggtcactaaa 3603246  T
Q  270 tggagaaaatcgatcactaagtgaattagcgactattttggagacctctaggatcaatatatcttcatc 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3603247 tggagaaaatcgatcactaagtgaattagcgactattttggagacctctaggatcaatatatcttcatc 3603315  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 42000065 - 41999973
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||||||| || |||||||| || |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  42000065 caagagtaccagatcccttccaagcaccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 41999973  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 45093218 - 45093130
Alignment:
Q  128 agtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||| || |||||||| || |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  45093218 agtaccagatgccttccaagcaccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 45093130  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 14769866 - 14769780
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagttt 210  Q
    ||||||||| | || |||| |||||| |||||||||| || |||||||||||| | | ||||  |||||||||||||||||||||||    
T  14769866 caagagtactagatccctttcaaacaccatcacaattaagtttaactcaaccagttagaggtctcatccaaccgatgtatatagttt 14769780  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 14341847 - 14341890
Alignment:
Q  73 ataacaaggagaactaatacaaggacagcaatggtaaatttttc 116  Q
    ||||||||||||||||||||||||  ||||||||||||||||||    
T  14341847 ataacaaggagaactaatacaagggaagcaatggtaaatttttc 14341890  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 9216004 - 9215907
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcattttaatga 221  Q
    ||||||||||| || |||||  ||||  ||||||||| | |||||| ||||||| || |||| ||||||||| | ||||||||||||| |||| ||||    
T  9216004 caagagtaccagatcccttcagaacactatcacaattaatcttaacccaaccaaccagaggtcgcatccaactggtgtatatagtttccttttgatga 9215907  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 33372979 - 33372929
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaac 174  Q
    ||||||||||| || ||||||||||| |||||||||| |||||||| ||||    
T  33372979 caagagtaccagatcccttccaaacaccatcacaattaagcttaacccaac 33372929  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 3603401 - 3603437
Alignment:
Q  337 tcctatcagcactcttgattattgtgtaggtacttcc 373  Q
    |||||||| |||||||||||||| |||||||||||||    
T  3603401 tcctatcaacactcttgattattctgtaggtacttcc 3603437  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 11996061 - 11996153
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    |||||||||||||| |||||||| || |||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||    
T  11996061 caagagtaccaaatcccttccaagcaccatcacaattaagcttaacccaaccaatcagaggtcgcatccaaccgatgtatatagtttcctttt 11996153  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 42865698 - 42865606
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||||||| || |||||||  || |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  42865698 caagagtaccagatcccttccaggcaccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 42865606  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 24126745 - 24126833
Alignment:
Q  128 agtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||| || |||||||| || |||| ||||| |||||||| |||| ||||  |||| ||||||||||||||||||||||||| ||||    
T  24126745 agtaccagatcccttccaagcaccatcgcaattaagcttaacccaacaaatcggaggtcgcatccaaccgatgtatatagtttcctttt 24126833  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 45034004 - 45034096
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||||||| || |||||||| || |||||||||| |||||||| |||||||||  |||| |||||||||||||||||||| |||| ||||    
T  45034004 caagagtaccatatcccttccaagcaccatcacaattaagcttaacccaaccaatcggaggtcgcatccaaccgatgtatataatttcctttt 45034096  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 46045688 - 46045596
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||||||| || |||||||| || |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  46045688 caagagtaccagatcccttccaagcaccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 46045596  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 38110999 - 38111092
Alignment:
Q  123 acaagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    |||||||||||| || |||||||| || |||||||||| |||||||| ||||||| |  |||| |||||||||||||||||||| |||| ||||    
T  38110999 acaagagtaccagatcccttccaagcaccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatataatttcctttt 38111092  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 8035492 - 8035400
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||||||| || |||||||| || |||||||||| |||||||| ||| ||||   |||| ||||||||||||||||||||||||| ||||    
T  8035492 caagagtaccagatcccttccaagcaccatcacaattaagcttaacccaagcaattggaggtcgcatccaaccgatgtatatagtttcctttt 8035400  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 14024716 - 14024624
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||||||| || |||||||| || |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  14024716 caagagtaccagatcccttccaagcaccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 14024624  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 32386269 - 32386177
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||||||| || || ||||| || |||||||||| |||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||    
T  32386269 caagagtaccagatcccatccaagcaccatcacaattaagcttaacccaaccaatcggaggtcgcatccaaccgatgtatatagtttcctttt 32386177  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 1369215 - 1369123
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||||||| || |||||||| || |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  1369215 caagagtaccagatcccttccaagcaccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 1369123  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 28945694 - 28945786
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||||||| || |||||||| || |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  28945694 caagagtaccagatcccttccaagcaccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 28945786  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 36859134 - 36859226
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||||||| || |||| ||| || |||||||||  ||||||||  ||||||||  |||| ||| |||||||||||||||| |||| ||||    
T  36859134 caagagtaccagatccctttcaagcaccatcacaatcaagcttaacctaaccaatctgaggtcgcacccaaccgatgtatatattttcctttt 36859226  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 6293797 - 6293705
Alignment:
Q  124 caagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    ||||||||||| || |||||||| || |||||||||| |||||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||    
T  6293797 caagagtaccagatcccttccaagcaccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttcctttt 6293705  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 28705771 - 28705680
Alignment:
Q  125 aagagtaccaaattccttccaaacatcatcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcatttt 216  Q
    |||||||||| || |||||||| || ||||| |||| |||||||| |||||||||  ||||  || ||||||||||||||||||||| ||||    
T  28705771 aagagtaccagatcccttccaagcaccatcaaaattaagcttaacccaaccaatctgaggtcacacccaaccgatgtatatagtttcctttt 28705680  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 1182241 - 1182170
Alignment:
Q  152 atcacaattgagcttaactcaaccaatcaaaggtggcatccaaccgatgtatatagtttcattttaatgagg 223  Q
    ||||||||| |||||||| |||||||||| |||| |||| |||||||||||||||||||| |||| ||||||    
T  1182241 atcacaattaagcttaacacaaccaatcagaggtcgcattcaaccgatgtatatagtttccttttgatgagg 1182170  T

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