View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_14 (Length: 371)
Name: NF3071_low_14
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_14 |
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| [»] scaffold0103 (2 HSPs) |
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Alignment Details
Target: scaffold0103 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 90 - 358
Target Start/End: Original strand, 44117 - 44390
Alignment:
| Q |
90 |
agaatttagaatgaaacttacacacactaaattttagcagagaaaaaatagttgtgttcgaactcgcgttttataatattaaatgttcttaaaaattatg |
189 |
Q |
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| T |
44117 |
agaatttagaatgaaacttacacacactaaattttagcagagaaaaaatagttgtgttcaaactcgtgttttataatattaaatgttcttaaaaattatg |
44216 |
T |
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| Q |
190 |
gcttagaaattatagttgggcgtaacacgg---------------ttataatgtgaggattattctcatttataaacacattgtcagatcatcttttatc |
274 |
Q |
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| T |
44217 |
gcttagaaattgtggttgggtctaatacggccctataaaaccaacttgtgatgtgagaattattctcattta-aaacacattattaggtcatcttttata |
44315 |
T |
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| Q |
275 |
tgacgttggagcaattattttatcatctaaaaaatgttttagctaagtaattataggttacgtttgaagcttgttaattactct |
358 |
Q |
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| T |
44316 |
tgatgtgggagcaattattttatcatctaaaaaatgtttt---------atcataggttacgtttgaagcttgttaattactct |
44390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43973 - 44012
Alignment:
| Q |
1 |
gaccttgcgtgtgccagccacatttacttggaccattttg |
40 |
Q |
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| T |
43973 |
gaccttgcgtgtgccagccacatttacttggaccattttg |
44012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 38731889 - 38731930
Alignment:
| Q |
227 |
gtgaggattattctcatttataaacacattgtcagatcatct |
268 |
Q |
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| T |
38731889 |
gtgaggattgttctcacttataaacacattgtcagatcatct |
38731930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 28510107 - 28510067
Alignment:
| Q |
244 |
ttataaacacattgtcagatcatcttttatctgacgttgga |
284 |
Q |
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| T |
28510107 |
ttataaacacattgtcaggtcatctcttatctgatgttgga |
28510067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 10523038 - 10523006
Alignment:
| Q |
241 |
catttataaacacattgtcagatcatcttttat |
273 |
Q |
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| T |
10523038 |
catttataaacacattgtcagatcatcttttat |
10523006 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 12688093 - 12688052
Alignment:
| Q |
239 |
ctcatttataaacacattgtcagatcatcttttatctgacgt |
280 |
Q |
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| T |
12688093 |
ctcacttataaacacattatcagattatcttttatctgacgt |
12688052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 3961464 - 3961500
Alignment:
| Q |
241 |
catttataaacacattgtcagatcatcttttatctga |
277 |
Q |
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| T |
3961464 |
catttataaacacattgtcagctcatctcttatctga |
3961500 |
T |
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