View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_15 (Length: 344)
Name: NF3071_low_15
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 1355362 - 1355680
Alignment:
| Q |
19 |
accaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355362 |
accaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaat |
1355461 |
T |
|
| Q |
119 |
gcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttccttccaatt |
218 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355462 |
gctaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttccttccaatt |
1355561 |
T |
|
| Q |
219 |
ccaacaactaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattgtgatttttgttttgcaataaaaggttttat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355562 |
ccaacaactaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattgtgatttttgttttgcaataaaaggttttat |
1355661 |
T |
|
| Q |
319 |
tttagtttccttcatctca |
337 |
Q |
| |
|
||||||||||||| ||||| |
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| T |
1355662 |
tttagtttccttcttctca |
1355680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 1362248 - 1362465
Alignment:
| Q |
19 |
accaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1362248 |
accaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaat |
1362347 |
T |
|
| Q |
119 |
gcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttccttccaatt |
218 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
1362348 |
gctaaagagttggggaaagttttcagttcaaaagatattcataatcaatatattgatgatctcattgctgctctttacaagtataggaatccttccaatt |
1362447 |
T |
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| Q |
219 |
ccaacaactaagtagact |
236 |
Q |
| |
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|||||||||| ||||||| |
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| T |
1362448 |
ccaacaactaggtagact |
1362465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 20493033 - 20493182
Alignment:
| Q |
19 |
accaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaat |
118 |
Q |
| |
|
|||||||| |||| |||||||||| ||||||||||||||| | || | |||||||||||||||| ||||||||||||||||||| | || || ||| |
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| T |
20493033 |
accaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctatagaaaaaat |
20493132 |
T |
|
| Q |
119 |
gcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
168 |
Q |
| |
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|| ||||| |||| ||| ||||| ||||||||||| |||||||| |||| |
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| T |
20493133 |
gccaaagatatgggaaagattttcggttcaaaagatcttcacaatgaata |
20493182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 11532211 - 11532409
Alignment:
| Q |
19 |
accaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaat |
118 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||||||| || || | |||||||||||| ||| |||||||||||||||||| | ||| |||||| |
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| T |
11532211 |
accaaggagtgagaaagacgggtcctttactagggactcagtagccaaaacattgaggttggtaataatggatgaggaaggaagtacgtacagaaacaat |
11532310 |
T |
|
| Q |
119 |
gcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttccttccaat |
217 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||||| ||||||| | |||||||| |||| ||||||| |
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| T |
11532311 |
gccaaagatatgggaaaggttttcagttcaaaagatcttcacaatcaatacattgaagattttattgttgctcttcaaaagtatagagttcattccaat |
11532409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 12846877 - 12847066
Alignment:
| Q |
20 |
ccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatg |
119 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||| ||| || | |||||||||| ||||| |||||| ||||||| || || ||||||||||| |
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| T |
12846877 |
ccaagaagtgaggaggatgggtcctttactagggactttgtagccctaacattgaggttagcaataatggatgccgaaggaattatttacaggaacaatg |
12846976 |
T |
|
| Q |
120 |
caaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttc |
209 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||| ||||||| |||| ||||| || || |||||||||||| | ||||||||||||| |
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| T |
12846977 |
caaaagagatgggcaagattttcagttcaaaagaacttcacaaaaaatacattgaagatttcattgctgctcttcaaaagtatagggttc |
12847066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 14589321 - 14589470
Alignment:
| Q |
19 |
accaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaat |
118 |
Q |
| |
|
||||||||||||| ||||||| | ||| |||||||| ||| ||| | |||||||||||| ||| ||||||||||||||||||| || |||||||||| |
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| T |
14589321 |
accaaggagtgagccagatggggccattaatagggactgtgttgctaaaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaat |
14589420 |
T |
|
| Q |
119 |
gcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
168 |
Q |
| |
|
|| ||||| |||| |||||| | |||||||||||| |||||||| |||| |
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| T |
14589421 |
gccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14589470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 14622979 - 14623128
Alignment:
| Q |
19 |
accaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaat |
118 |
Q |
| |
|
||||||||||||| ||||||| | ||| |||||||| ||| ||| | |||||||||||| ||| ||||||||||||||||||| || |||||||||| |
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|
| T |
14622979 |
accaaggagtgagccagatggggccattaatagggactgtgttgctaaaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaat |
14623078 |
T |
|
| Q |
119 |
gcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
168 |
Q |
| |
|
|| ||||| |||| |||||| | |||||||||||| |||||||| |||| |
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|
| T |
14623079 |
gccaaagacatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14623128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 29954898 - 29955088
Alignment:
| Q |
19 |
accaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagta-gtttcaggaacaa |
117 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| | || || |||||||||||||||| ||||||||||||||||||| || || |||| || |
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|
| T |
29954898 |
accaaggagtgagcaagatgggtcctttactagggactcgatagcccaaacattgaggttggcaatagtggatgaggaaggaagtatgtatc-ggaataa |
29954996 |
T |
|
| Q |
118 |
tgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttc |
209 |
Q |
| |
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||| ||||| ||| ||||||||||||||||||||| |||||||| |||| ||| | || | |||||||||||| | |||||||| |||| |
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| T |
29954997 |
tgccaaagatatggaaaaggttttcagttcaaaagatcttcacaatgaatacattaaagatgtcattgctgctcttcaaaagtatagagttc |
29955088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 51369555 - 51369360
Alignment:
| Q |
19 |
accaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaat |
118 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||| || | |||||||||||| ||| |||||||||||||| || | | |||||| ||| |
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|
| T |
51369555 |
accaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtggatgaggaaggtagcacgtgcaggaaaaat |
51369456 |
T |
|
| Q |
119 |
gcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttccttcc |
214 |
Q |
| |
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|| ||||| |||| || ||||||||||||||||| ||||||||||||| ||| | || || || ||||||||| | ||| |||| |||| |||| |
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|
| T |
51369455 |
gctaaagatatgggaaaaattttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcatagagttcattcc |
51369360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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