View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_17 (Length: 322)
Name: NF3071_low_17
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 8448973 - 8448665
Alignment:
| Q |
1 |
ctgcaggctactacctttccgggttctctggattcagccccaattcagaagacattttactggctgagctatctactatctaccatggtttagtgctggt |
100 |
Q |
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| T |
8448973 |
ctgcaggctactacctttccggtttctctggattcatccccaattcagaagacattttacttgctgagctatctactatctaccatggtttagtgctggt |
8448874 |
T |
|
| Q |
101 |
ttgagacatagacatcaccgaatttgtgtgctacaccgactcacttctttgcttaaacctcattgcaggcccagccatgaattatcacagttatgctgct |
200 |
Q |
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| T |
8448873 |
tcgagacatagacatcaccgaatttgtgtgctacaccgactcacttctttgcttaaacctcattgcaggcccagccatgaattatcacagttatgctgct |
8448774 |
T |
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| Q |
201 |
ctcatcgatgatattacagacctgctgtcatccaacaatacttcaatcttccacactctgcgggagggtaaccaatgcgctgattttttggttaagattg |
300 |
Q |
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| T |
8448773 |
ctcatcgatgatattacagacctgctgtcatccaacaatacttcaatcttccacactctgcgggagggtaaccaatgcgctgattttttggttaagattg |
8448674 |
T |
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| Q |
301 |
gagcttcct |
309 |
Q |
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| T |
8448673 |
gagcttcct |
8448665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 28046433 - 28046632
Alignment:
| Q |
1 |
ctgcaggctactacctttccgggttctctggattcagccccaattcagaagacattttactggctgagctatctactatctaccatggtttag-tgctgg |
99 |
Q |
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| T |
28046433 |
ctgcaggttactacctatccggtttctctggtttcatctctaattcagaagacattttacttgctgagctctctgcaatctaccacggtttaacttctgg |
28046532 |
T |
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| Q |
100 |
tttgagacatagacatcaccgaatttgtgtgctacaccgactcacttctttgcttaaacctcattgcaggcccagccatgaattatcacagttatgctgc |
199 |
Q |
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| T |
28046533 |
ctcgagacttggacatcactgaatttgtgtgttacaacgactcccttctttgcttaaatctcattacaggaccagccatgaattttcacacttatgctgc |
28046632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 4348842 - 4348784
Alignment:
| Q |
231 |
tccaacaatacttcaatcttccacactctgcgggagggtaaccaatgcgctgatttttt |
289 |
Q |
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|||||||| |||| |||||| |||||| ||||||||||||| ||||||| ||||||||| |
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| T |
4348842 |
tccaacaacactttaatctttcacactttgcgggagggtaatcaatgcgttgatttttt |
4348784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 40557184 - 40557122
Alignment:
| Q |
233 |
caacaatacttcaatcttccacactctgcgggaggg-taaccaatgcgctgattttttggttaa |
295 |
Q |
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|||||||||||||||||| ||||| |||||||||| ||||||||||| |||||||||| |||| |
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| T |
40557184 |
caacaatacttcaatctttcacaca-tgcgggaggggtaaccaatgcgttgattttttgtttaa |
40557122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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