View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_2 (Length: 632)
Name: NF3071_low_2
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 564; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Original strand, 29007007 - 29007615
Alignment:
| Q |
1 |
atcaaattctcaaattgagtatacagagtttactttgaactaaacaagttcatttgctaacaaacaaattcacagtagcaaagattctcacattagcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007007 |
atcaaattctcaaattgagtatacagagtttactttgaactaaacaagttcatttgctaacaaacaaattcacagtagcaaagattctcacattagcaac |
29007106 |
T |
|
| Q |
101 |
acaagaacatcactcactttggaacaattgactaaagtcactaaaccaaatcacaatctatatgtactaaacaatatgtcattataaatgaccaaacacc |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29007107 |
acaagatcatcactcactttggaacaattgactaaagtcactaaaccaaatcacaatctatatgtactaaacaatatgtcattatgaatgaccaaacacc |
29007206 |
T |
|
| Q |
201 |
cacatcagtgaaataaactgtctagtgtgagctagctagttgatagctgaaaggtgaacnnnnnnntaagaccaagcgaaagctcggatgattacgagtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
29007207 |
cacatcagtgaaataaactgtctagtgtgagctagctagttgatagctgaaaggtgaacaaaaaaagaagaccaagcgaaagctaagatgattacgagtg |
29007306 |
T |
|
| Q |
301 |
taatcaatggaacacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactaggaggagaatcactgtgtgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007307 |
taatcaatggaacacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactaggaggagaatcactgtgtgg |
29007406 |
T |
|
| Q |
401 |
tggactaggaggagaatcaccattcggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagct |
500 |
Q |
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| T |
29007407 |
tggactaggaggagaatcaccattcggtggactaggaggagaatgagggcgtggtgcagaactaggtggaggagaagttccagtgttgttggactgagct |
29007506 |
T |
|
| Q |
501 |
tgaactttgacttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007507 |
tgaactttgacttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctc |
29007606 |
T |
|
| Q |
601 |
cagtgttgt |
609 |
Q |
| |
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||||||||| |
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| T |
29007607 |
cagtgttgt |
29007615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 426 - 560
Target Start/End: Complemental strand, 21465563 - 21465429
Alignment:
| Q |
426 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
525 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
21465563 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggaggagaagttccagtgttgttggactgagcttgaactttgactttgagtttcaggc |
21465464 |
T |
|
| Q |
526 |
cttgttgacaatgacccattctgccacaaacgaag |
560 |
Q |
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||||||| ||||| ||||||||||||||||||||| |
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|
| T |
21465463 |
cttgttggcaatggcccattctgccacaaacgaag |
21465429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 426 - 601
Target Start/End: Complemental strand, 21409776 - 21409612
Alignment:
| Q |
426 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
525 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |||| |
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| T |
21409776 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggagg-----------tgttgttggactgagcttgaactttgactttgagtttcaggc |
21409688 |
T |
|
| Q |
526 |
cttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctcc |
601 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
21409687 |
cttgttggcaatggcccattctgccacaaacgaagtagcgttttcctgattcaatgacgtggatcactgtttctcc |
21409612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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