View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3071_low_22 (Length: 284)

Name: NF3071_low_22
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3071_low_22
NF3071_low_22
[»] chr5 (23 HSPs)
chr5 (7-277)||(8334404-8334673)
chr5 (176-252)||(9202741-9202817)
chr5 (152-263)||(11707032-11707142)
chr5 (201-263)||(7808530-7808593)
chr5 (177-263)||(13604832-13604917)
chr5 (205-263)||(16937865-16937923)
chr5 (207-261)||(17258868-17258921)
chr5 (80-262)||(39105363-39105551)
chr5 (205-259)||(42100341-42100395)
chr5 (67-140)||(42573890-42573963)
chr5 (175-238)||(14182388-14182450)
chr5 (69-140)||(41059608-41059679)
chr5 (176-238)||(4014431-4014493)
chr5 (205-263)||(10639983-10640041)
chr5 (175-269)||(11700163-11700256)
chr5 (70-140)||(14675011-14675081)
chr5 (67-129)||(28776862-28776923)
chr5 (155-229)||(32197700-32197774)
chr5 (196-238)||(34160752-34160794)
chr5 (206-263)||(1465002-1465059)
chr5 (210-263)||(2568693-2568745)
chr5 (67-140)||(5963393-5963466)
chr5 (149-238)||(11615475-11615564)
[»] chr6 (16 HSPs)
chr6 (149-263)||(2735036-2735157)
chr6 (149-263)||(9093538-9093659)
chr6 (169-263)||(2455253-2455347)
chr6 (182-236)||(27894053-27894107)
chr6 (175-259)||(34430447-34430531)
chr6 (149-236)||(32386115-32386202)
chr6 (205-263)||(9912173-9912231)
chr6 (196-250)||(13907868-13907922)
chr6 (200-262)||(34882404-34882466)
chr6 (198-235)||(1344892-1344929)
chr6 (207-263)||(9027610-9027665)
chr6 (196-228)||(26694899-26694931)
chr6 (207-263)||(31420977-31421032)
chr6 (175-263)||(31624090-31624177)
chr6 (182-262)||(33887837-33887916)
chr6 (205-261)||(34910393-34910449)
[»] chr1 (34 HSPs)
chr1 (175-262)||(34290236-34290322)
chr1 (149-263)||(47498821-47498939)
chr1 (175-263)||(7136981-7137068)
chr1 (151-250)||(15784305-15784404)
chr1 (175-263)||(4576805-4576892)
chr1 (203-263)||(41184632-41184692)
chr1 (207-260)||(10199394-10199446)
chr1 (69-180)||(37841886-37841996)
chr1 (169-236)||(26779934-26780001)
chr1 (196-263)||(38503447-38503514)
chr1 (207-262)||(50998570-50998625)
chr1 (175-261)||(6102154-6102240)
chr1 (209-263)||(11941296-11941350)
chr1 (203-257)||(38480563-38480617)
chr1 (149-250)||(27146250-27146351)
chr1 (210-259)||(27976639-27976688)
chr1 (199-252)||(30815647-30815699)
chr1 (177-258)||(38116065-38116146)
chr1 (67-140)||(48064195-48064268)
chr1 (150-182)||(1232962-1232994)
chr1 (207-263)||(25479613-25479668)
chr1 (182-230)||(38867846-38867894)
chr1 (149-259)||(10744275-10744384)
chr1 (196-250)||(27145731-27145784)
chr1 (67-97)||(35925591-35925621)
chr1 (175-228)||(2777892-2777945)
chr1 (175-263)||(6556971-6557060)
chr1 (190-259)||(37473418-37473487)
chr1 (175-228)||(37842372-37842425)
chr1 (175-252)||(42174855-42174932)
chr1 (175-251)||(5886989-5887064)
chr1 (196-236)||(28689461-28689501)
chr1 (207-263)||(38170673-38170728)
chr1 (196-256)||(41195183-41195242)
[»] chr4 (21 HSPs)
chr4 (149-228)||(47800597-47800676)
chr4 (175-261)||(17822849-17822935)
chr4 (182-259)||(55414406-55414483)
chr4 (175-263)||(23459628-23459715)
chr4 (151-235)||(50400463-50400547)
chr4 (149-262)||(27043813-27043933)
chr4 (67-140)||(11389413-11389485)
chr4 (69-129)||(42641755-42641815)
chr4 (150-205)||(55437333-55437388)
chr4 (205-263)||(13126558-13126616)
chr4 (207-257)||(24169295-24169345)
chr4 (205-263)||(25904205-25904263)
chr4 (67-129)||(50298417-50298479)
chr4 (205-238)||(25332805-25332838)
chr4 (68-129)||(26883882-26883943)
chr4 (196-228)||(22539075-22539107)
chr4 (183-263)||(29912956-29913035)
chr4 (175-227)||(36722687-36722739)
chr4 (207-263)||(42461283-42461338)
chr4 (215-263)||(49939933-49939981)
chr4 (203-263)||(52315179-52315239)
[»] chr3 (25 HSPs)
chr3 (174-263)||(21367666-21367755)
chr3 (210-259)||(26878235-26878284)
chr3 (67-128)||(35127494-35127555)
chr3 (175-263)||(39602193-39602280)
chr3 (175-238)||(36887504-36887567)
chr3 (175-261)||(402526-402612)
chr3 (149-238)||(2128265-2128354)
chr3 (67-140)||(30574023-30574096)
chr3 (175-255)||(52440653-52440732)
chr3 (175-238)||(40665429-40665492)
chr3 (175-226)||(44747427-44747478)
chr3 (205-263)||(30443923-30443981)
chr3 (205-263)||(34610788-34610846)
chr3 (182-256)||(35394487-35394561)
chr3 (67-129)||(35959588-35959649)
chr3 (196-262)||(38902087-38902153)
chr3 (182-227)||(3845580-3845625)
chr3 (206-263)||(5391910-5391966)
chr3 (175-240)||(25776117-25776182)
chr3 (205-238)||(33883757-33883790)
chr3 (205-261)||(20880506-20880562)
chr3 (167-263)||(24624202-24624297)
chr3 (175-263)||(39980729-39980817)
chr3 (207-235)||(41633392-41633420)
chr3 (205-237)||(50946294-50946326)
[»] chr8 (19 HSPs)
chr8 (149-216)||(26215463-26215530)
chr8 (205-263)||(33808333-33808391)
chr8 (196-252)||(3536938-3536994)
chr8 (175-263)||(9956796-9956884)
chr8 (207-263)||(13459677-13459732)
chr8 (205-261)||(30389129-30389184)
chr8 (205-263)||(10120786-10120844)
chr8 (209-263)||(32840968-32841022)
chr8 (207-263)||(3161606-3161661)
chr8 (175-259)||(27028831-27028915)
chr8 (68-116)||(31916468-31916516)
chr8 (68-123)||(2840246-2840301)
chr8 (68-123)||(2844933-2844988)
chr8 (205-263)||(16825520-16825577)
chr8 (175-229)||(43504751-43504805)
chr8 (182-235)||(4762516-4762569)
chr8 (207-252)||(37353243-37353287)
chr8 (207-263)||(10383917-10383972)
chr8 (207-263)||(35643970-35644026)
[»] chr2 (38 HSPs)
chr2 (175-262)||(680503-680589)
chr2 (149-263)||(16451092-16451206)
chr2 (67-140)||(1985453-1985526)
chr2 (103-228)||(4026739-4026870)
chr2 (182-263)||(26626880-26626961)
chr2 (205-257)||(40682383-40682435)
chr2 (196-263)||(7035549-7035616)
chr2 (149-263)||(28677642-28677755)
chr2 (182-238)||(1493520-1493576)
chr2 (175-263)||(1625900-1625988)
chr2 (196-259)||(7928284-7928348)
chr2 (67-131)||(26626763-26626826)
chr2 (175-263)||(32592586-32592674)
chr2 (175-263)||(39621951-39622038)
chr2 (207-263)||(43717119-43717174)
chr2 (175-239)||(44590034-44590098)
chr2 (149-263)||(8017401-8017521)
chr2 (207-254)||(12147489-12147535)
chr2 (175-238)||(29628750-29628813)
chr2 (205-236)||(35993389-35993420)
chr2 (176-263)||(40279268-40279355)
chr2 (176-263)||(40279338-40279425)
chr2 (196-250)||(3611247-3611301)
chr2 (196-262)||(12464685-12464750)
chr2 (148-178)||(13325536-13325566)
chr2 (209-263)||(33256774-33256827)
chr2 (181-263)||(35378999-35379080)
chr2 (205-263)||(45229541-45229599)
chr2 (203-252)||(5365570-5365619)
chr2 (208-237)||(15978018-15978047)
chr2 (214-263)||(18525220-18525268)
chr2 (207-236)||(36236451-36236480)
chr2 (205-257)||(2227196-2227248)
chr2 (175-263)||(18066128-18066216)
chr2 (207-263)||(40158750-40158805)
chr2 (175-263)||(40279197-40279285)
chr2 (196-236)||(43456716-43456756)
chr2 (175-227)||(43985021-43985073)
[»] scaffold0024 (2 HSPs)
scaffold0024 (149-219)||(21311-21381)
scaffold0024 (151-193)||(58906-58948)
[»] chr7 (14 HSPs)
chr7 (205-262)||(19302546-19302603)
chr7 (202-263)||(27566676-27566737)
chr7 (68-116)||(7612346-7612394)
chr7 (175-263)||(12110360-12110447)
chr7 (189-257)||(38499901-38499969)
chr7 (207-267)||(44808190-44808249)
chr7 (175-262)||(19022568-19022655)
chr7 (160-263)||(19214388-19214491)
chr7 (212-263)||(34035954-34036005)
chr7 (149-194)||(39591525-39591570)
chr7 (208-252)||(6552286-6552329)
chr7 (211-263)||(25670569-25670620)
chr7 (175-235)||(40530419-40530479)
chr7 (69-129)||(46139831-46139890)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 8334404 - 8334673
Alignment:
Q  7 attgcataatgtcatactttttgaacagtttcgtttacaaccagcatgtatgctttagttgataaacaacttaatttgcagcttatgtcattagctctta 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8334404 attgcataatgtcatactttttgaacagtttcatttacaaccagcatgtatgctttagttgataaacaacttaatttgcagcttatgtcattagctctta 8334503  T
Q  107 tcatgataagtgcttatctataaaccatttctatnnnnnnntgataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaa 206  Q
    |||||||| | |||||||||||||| ||||| ||       |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8334504 tcatgatacgcgcttatctataaactatttcaataaaaaa-tgataaaataaatttaaattattttcgtataagatgttttgataagtaatcttgaaaaa 8334602  T
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataaggtctgtctcaaaag 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8334603 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataagttctgtctcaaaag 8334673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 9202817 - 9202741
Alignment:
Q  176 ataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagct 252  Q
    ||||| |||||| |||||| |||||||| ||||||||||||||||||| |||||  |||||||  ||||||||||||    
T  9202817 ataagctgttttcataagttatcttgaagaacttatgaaaataagctggaaacagcttatgaacaatgtcataagct 9202741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 11707032 - 11707142
Alignment:
Q  152 aaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagc 251  Q
    ||||||||||| ||||   |||||||||| |||||| |||||  |||||| | | ||| |||||||||||||||||||| |||| ||| ||||||||| |    
T  11707032 aaaataaagttgaattgccttcgtataagctgttttcataagctatcttgtagagcttttgaaaataagctgaaaacaacttat-aaacatgtcataatc 11707130  T
Q  252 tattttcataag 263  Q
    |||||| |||||    
T  11707131 tattttgataag 11707142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 7808530 - 7808593
Alignment:
Q  201 gaaaaactt-atgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||||| ||||||||||||||||||||  |||||||  |||| ||||||||||||||||||    
T  7808530 gaaaaacttcatgaaaataagctgaaaacagcttatgaacaatgttataagctattttcataag 7808593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 13604917 - 13604832
Alignment:
Q  177 taagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||| |||||| |||||| |||||||| | |||||||||||||| |||||||||  ||||  | |||||||||||| ||||||||||    
T  13604917 taagctgttttcataagttatcttgaagagcttatgaaaataagttgaaaacaacgtatg-gacatgtcataagctgttttcataag 13604832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 16937923 - 16937865
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||||||||||||| |  ||||||||| ||||||||||| ||||||||||    
T  16937923 aacttaggaaaataagctgaaaaaagcttatgaaatttgtcataagctgttttcataag 16937865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 17258921 - 17258868
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcata 261  Q
    |||||||||||||||||||||||  ||||| || |||||||||||||||||||||    
T  17258921 cttatgaaaataagctgaaaacagcttatg-aacatgtcataagctattttcata 17258868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 262
Target Start/End: Original strand, 39105363 - 39105551
Alignment:
Q  80 atttgcagcttatgtcattagctcttatcatgataagtgcttatctataaaccatttctatnnnnnnntgataaaataaagttaaattattttcgtataa 179  Q
    |||||||||||||  ||| ||  |||||||||||||| |||||| ||||| | ||||||||       | || |||| |||||||||| |||||||||||    
T  39105363 atttgcagcttatagcataagtgcttatcatgataagcgcttatgtataagctatttctatagctaaat-atgaaatgaagttaaattgttttcgtataa 39105461  T
Q  180 gat-------gttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataa 262  Q
    | |       ||||| |||||  |||||| | |||||||||||||||||| |||| |  |||||||  |||||||||||| |||||||||    
T  39105462 gctataatctgttttcataagctatcttggagaacttatgaaaataagctaaaaatagcttatgaacaatgtcataagctgttttcataa 39105551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 42100341 - 42100395
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttca 259  Q
    |||||||||||||||| ||||||||  || |||| ||||||||||||||||||||    
T  42100341 aacttatgaaaataagatgaaaacaccttttgaactatgtcataagctattttca 42100395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 42573963 - 42573890
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataaaccatttctat 140  Q
    |||||||| |||||||||||||||||  | | ||| |||||||||||||| |||||| ||||| | ||||||||    
T  42573963 gataaacagcttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatgtataagctatttctat 42573890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 14182450 - 14182388
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaa 238  Q
    |||||| |||||| |||||| ||| ||| || |||||||||||||| |||||||||||||||||    
T  14182450 tataagctgttttcataagttatcctgagaa-cttatgaaaataagttgaaaacaatttatgaa 14182388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 41059608 - 41059679
Alignment:
Q  69 taaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataaaccatttctat 140  Q
    |||||||||||||||| ||||||| | || ||| ||||||||||||| |||||||  |||| | ||||||||    
T  41059608 taaacaacttaatttgtagcttatatgataagcacttatcatgataattgcttatgcataagctatttctat 41059679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 4014493 - 4014431
Alignment:
Q  176 ataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaa 238  Q
    ||||| |||||| |||||  |||||| | |||||||||||||||||||||||||  |||||||    
T  4014493 ataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttatgaa 4014431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 10639983 - 10640041
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||||||||||||||  ||| |  |||||||| |||||||||||| ||||||||||    
T  10639983 aacttatgaaaataagctagaaaaagcttatgaaaaatgtcataagctgttttcataag 10640041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 269
Target Start/End: Original strand, 11700163 - 11700256
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataaggtctgt 269  Q
    |||||| |||||||||| |  ||| || | |||||||||||||||| ||||| |||||||||||  |||||||||| | ||| |||||| |||||    
T  11700163 tataagttgttttgatatgctatcgtggagaacttatgaaaataagatgaaa-caatttatgaacaatgtcataagttgtttccataagttctgt 11700256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 14675081 - 14675011
Alignment:
Q  70 aaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataaaccatttctat 140  Q
    |||||||||||||||||||||||| ||| |    |||||||||||||||||||| || || | ||||||||    
T  14675081 aaacaacttaatttgcagcttatggcataaatagttatcatgataagtgcttatgtagaagctatttctat 14675011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 28776862 - 28776923
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataa 129  Q
    ||||||||||||| ||||||||||||  | | ||| ||||||||||||||||||||| |||||    
T  28776862 gataaacaactta-tttgcagcttatagcctaagcacttatcatgataagtgcttatgtataa 28776923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 32197700 - 32197774
Alignment:
Q  155 ataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaaca 229  Q
    ||||||| ||| ||||||| |||||| |||||  |||||  ||| |||| |||||||||||||||| ||||||||    
T  32197700 ataaagtcaaactattttcatataagctgtttccataagctatcctgaagaacttatgaaaataagatgaaaaca 32197774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 34160752 - 34160794
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaa 238  Q
    |||||| | ||||||||||||||||||||||||| ||||||||    
T  34160752 atcttggagaacttatgaaaataagctgaaaacagtttatgaa 34160794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 1465059 - 1465002
Alignment:
Q  206 acttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||| |||||||||||||||||||| ||||||   ||| |||||||| ||||||||||    
T  1465059 acttgtgaaaataagctgaaaacaacttatgagcaatgccataagctgttttcataag 1465002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 2568693 - 2568745
Alignment:
Q  210 atgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||||||||| |||| || ||||||| ||||||||||||| ||||||||||    
T  2568693 atgaaaataagctaaaaataacttatgaa-tatgtcataagctgttttcataag 2568745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 5963466 - 5963393
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataaaccatttctat 140  Q
    ||||||||||||||||||||  ||||  ||| |||  ||||||||||||| |||||| || |||| ||||||||    
T  5963466 gataaacaacttaatttgcaatttatagcataagcatttatcatgataagcgcttatgtacaaactatttctat 5963393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 11615475 - 11615564
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaa 238  Q
    ||||||||||||| ||||| ||| |||||||| |||||| |||||  ||| | |  | |||||| ||||||||||||||||  |||||||    
T  11615475 gataaaataaagtcaaattgtttacgtataagctgttttcataagatatccttatgagcttatggaaataagctgaaaacagcttatgaa 11615564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 2735036 - 2735157
Alignment:
Q  149 gataaaataaagttaaattattttcgtataa-------gatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaata 241  Q
    |||||||||||||||||||||||| ||||||       | |||||| ||||| ||||||||| ||||||||||||||||| |||||||  |||||||| |    
T  2735036 gataaaataaagttaaattatttttgtataatctataagctgttttcataagcaatcttgaacaacttatgaaaataagccgaaaacagcttatgaaaaa 2735135  T
Q  242 tgtcataagctattttcataag 263  Q
    ||||||||||  ||||||||||    
T  2735136 tgtcataagccgttttcataag 2735157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 9093659 - 9093538
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagat-------gttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaata 241  Q
    ||||||||||||||||||| |||||||||||| |       ||||| |||||   ||||  | |||||| ||||||||||||||||||  |||| ||  |    
T  9093659 gataaaataaagttaaattgttttcgtataagctataagctgttttcataagctgtcttagagaacttaagaaaataagctgaaaacaggttattaacaa 9093560  T
Q  242 tgtcataagctattttcataag 263  Q
    ||||||||||||||||||||||    
T  9093559 tgtcataagctattttcataag 9093538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 2455253 - 2455347
Alignment:
Q  169 ttttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||| |||||| ||| | ||||||| | || || |||||||||||||||||||| |||| ||  |||| ||||| | ||||||||||    
T  2455253 ttttcgtataagctgttttcatatgcaatcttggagaagttgtgaaaataagctgaaaacaacttataaacaatgtaataagttgttttcataag 2455347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 27894053 - 27894107
Alignment:
Q  182 tgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatg 236  Q
    |||||| |||||  |||||||||| ||||||||||||||||||||||| ||||||    
T  27894053 tgttttcataagatatcttgaaaagcttatgaaaataagctgaaaacagtttatg 27894107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 34430531 - 34430447
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttca 259  Q
    |||||| |||||| |||||  |||||| | || |||||||||||||||||||| |  |||||| | |||||||||||| ||||||    
T  34430531 tataaggtgttttcataagctatcttggagaagttatgaaaataagctgaaaaaagcttatgataaatgtcataagctgttttca 34430447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 32386202 - 32386115
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatg 236  Q
    ||||||||||||| ||| | ||||  |||||| |||||| || ||| ||| || ||| ||||||||| |||||||||||||| |||||    
T  32386202 gataaaataaagtaaaactgtttttatataagctgttttcattagttatcctggaaagcttatgaaagtaagctgaaaacaacttatg 32386115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 9912231 - 9912173
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||| ||||||  |||||||  ||||||||||||  |||||||||    
T  9912231 aacttatgaaaataagctcaaaacagcttatgaacaatgtcataagctggtttcataag 9912173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 13907868 - 13907922
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataag 250  Q
    |||||||| | ||||||||||||| | ||||||| ||||| ||||||||||||||    
T  13907868 atcttgaagagcttatgaaaataaacggaaaacagtttatcaaatatgtcataag 13907922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 34882466 - 34882404
Alignment:
Q  200 tgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataa 262  Q
    |||| ||||||||||||||||  |||||||| |||||||  |||||||||  |||||||||||    
T  34882466 tgaagaacttatgaaaataagtggaaaacaacttatgaacaatgtcataacttattttcataa 34882404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 1344929 - 1344892
Alignment:
Q  198 cttgaaaaacttatgaaaataagctgaaaacaatttat 235  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  1344929 cttggaaaacttatgaaaataagttgaaaacaatttat 1344892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 9027610 - 9027665
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||||||||| |||||  | |||||||||| ||||| ||||||    
T  9027610 cttatgaaaataagctgaaaacaacttatg-gacatgtcataagttatttccataag 9027665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 26694899 - 26694931
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaac 228  Q
    |||||||| ||||||||||||||||||||||||    
T  26694899 atcttgaagaacttatgaaaataagctgaaaac 26694931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 31420977 - 31421032
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||||||||| ||||| ||||||  ||||| | ||||||||||    
T  31420977 cttatgaaaataagctgaaaacaacttatg-aatatgcgataagttgttttcataag 31421032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 31624090 - 31624177
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| ||| |  |||||| | || ||||||||||||| ||||||||  ||||| || |||||||||||| ||||||||||    
T  31624090 tataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatg-aacatgtcataagctgttttcataag 31624177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 33887837 - 33887916
Alignment:
Q  182 tgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataa 262  Q
    |||||| |||||  ||| |||||  |||||| ||||||| ||||||||| || ||||  ||||||||||||||||||||||    
T  33887837 tgttttcataagctatcctgaaatgcttatggaaataagttgaaaacaacttgtgaac-atgtcataagctattttcataa 33887916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 34910449 - 34910393
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcata 261  Q
    ||||||||||| ||||| |||||||| | |||||  |||||||||||| ||||||||    
T  34910449 aacttatgaaagtaagcggaaaacaactcatgaacaatgtcataagctgttttcata 34910393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 34290236 - 34290322
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataa 262  Q
    |||||| |||||| |||||  |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||    
T  34290236 tataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatg-aatatgtcataagcttttttaataa 34290322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 47498939 - 47498821
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatg----ttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgt 244  Q
    |||||||||||||||||||||||||||||||| ||    ||||  ||||  ||||  |  |||||||||||||||||| ||||||| |||||||  || |    
T  47498939 gataaaataaagttaaattattttcgtataagctgcctgttttcgtaagctatctcaatcaacttatgaaaataagctaaaaacaacttatgaacaatat 47498840  T
Q  245 cataagctattttcataag 263  Q
    |||||||||||||||||||    
T  47498839 cataagctattttcataag 47498821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 7137068 - 7136981
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| |||||  |||||| | ||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||    
T  7137068 tataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatg-aatatgtcataagcgattttcataag 7136981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 15784305 - 15784404
Alignment:
Q  151 taaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataag 250  Q
    ||||||||||||||||| |||||||||||| || ||| |||||  |||||| | ||||| |||||||||||| ||||||| || ||||  ||||||||||    
T  15784305 taaaataaagttaaattgttttcgtataagctggttttataagctatcttggagaacttgtgaaaataagctaaaaacaacttgtgaacaatgtcataag 15784404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 4576805 - 4576892
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| |||||  || ||||| ||||||||||||||||||||| |||| |||| ||| ||||||||| |||||||||||||    
T  4576805 tataagctgttttcataagctatattgaataacttatgaaaataagctgaacacaacttat-aaacatgtcataaactattttcataag 4576892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 41184692 - 41184632
Alignment:
Q  203 aaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||| |||||| || ||||||||  ||||||||||||||||||||||    
T  41184692 aaaacttatgaaaataagttgaaaaaaacttatgaaaattgtcataagctattttcataag 41184632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 10199446 - 10199394
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcat 260  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  10199446 cttatgaaaataagctgaaaacaacttatg-aacatgtcataagctattttcat 10199394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 37841886 - 37841996
Alignment:
Q  69 taaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataaaccatttctatnnnnnnntgataaaataaagttaaatta 168  Q
    ||||||||||||||||||||| ||  ||| ||| ||||||||||||||| || || ||||| | ||| ||||       ||||||||||||||||||||     
T  37841886 taaacaacttaatttgcagctaatagcataagcacttatcatgataagtactcatgtataagctattcctat-aacaaatgataaaataaagttaaattg 37841984  T
Q  169 ttttcgtataag 180  Q
    ||||||||||||    
T  37841985 ttttcgtataag 37841996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 26780001 - 26779934
Alignment:
Q  169 ttttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatg 236  Q
    ||||| |||||| |||||| |||||  |||||||| |||||||||||||||| ||||||||| |||||    
T  26780001 ttttcctataagttgttttcataagctatcttgaagaacttatgaaaataagttgaaaacaacttatg 26779934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 38503514 - 38503447
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| | |||||||||||||||||||||||||| |||||||  |||||||| ||| ||| ||||||    
T  38503514 atcttggagaacttatgaaaataagctgaaaacaacttatgaacaatgtcataggctgtttccataag 38503447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 50998570 - 50998625
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataa 262  Q
    |||||||||||||||||||||| |||||| ||| |||||||||| | |||||||||    
T  50998570 cttatgaaaataagctgaaaaccatttattaaacatgtcataagttgttttcataa 50998625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 6102154 - 6102240
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcata 261  Q
    |||||| |||||| |||||  |||| | | || ||||| |||||||||||||||||||||||||  || ||||||||| ||||||||    
T  6102154 tataagctgttttcataagctatctgggagaatttatggaaataagctgaaaacaatttatgaacaatatcataagctgttttcata 6102240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 11941296 - 11941350
Alignment:
Q  209 tatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||||||  |||||||  |||| ||||||||||||||||||    
T  11941296 tatgaaaataagctgaaaacagcttatgaacaatgttataagctattttcataag 11941350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 38480617 - 38480563
Alignment:
Q  203 aaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctatttt 257  Q
    |||||||||||||||||||| |||||| |||||||   |||||||||||||||||    
T  38480617 aaaacttatgaaaataagctaaaaacagtttatgagcaatgtcataagctatttt 38480563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 27146351 - 27146250
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcata 248  Q
    ||||||||||| |||||||| ||||||||||| | ||||  |||   |||||||| |||||| |||| |||| ||||||||  |||||||  ||||||||    
T  27146351 gataaaataaatttaaattagtttcgtataagttatttttgtaaactatcttgaagaacttacgaaagtaagttgaaaacagcttatgaacaatgtcata 27146252  T
Q  249 ag 250  Q
    ||    
T  27146251 ag 27146250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 27976639 - 27976688
Alignment:
Q  210 atgaaaataagctgaaaacaatttatgaaatatgtcataagctattttca 259  Q
    |||||||||||||||||| |  |||||||| |||||||||||||||||||    
T  27976639 atgaaaataagctgaaaaaagcttatgaaaaatgtcataagctattttca 27976688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 30815699 - 30815647
Alignment:
Q  199 ttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagct 252  Q
    ||||| ||||||||||||||||||||||||| |||||| || ||||||||||||    
T  30815699 ttgaagaacttatgaaaataagctgaaaacattttatg-aacatgtcataagct 30815647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 38116146 - 38116065
Alignment:
Q  177 taagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttc 258  Q
    |||| ||||||  ||||| |||||| | ||||||||||| ||||||| |||||| ||| |||  ||||||||||||||||||    
T  38116146 taagttgttttcttaagttatcttggagaacttatgaaagtaagctggaaacaacttaggaacaatgtcataagctattttc 38116065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 48064195 - 48064268
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataaaccatttctat 140  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||||||| ||| || || || |||| ||||||||    
T  48064195 gataaacaacttaatttgcagcttatagcataagcccttatcatgattagtcctaatgtagaaacaatttctat 48064268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 1232994 - 1232962
Alignment:
Q  150 ataaaataaagttaaattattttcgtataagat 182  Q
    |||||||||||||||||||||||||||||||||    
T  1232994 ataaaataaagttaaattattttcgtataagat 1232962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 25479613 - 25479668
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||||||||| | ||| || ||||||||| |||||||||||||    
T  25479613 cttatgaaaataagctgaaaacaactaatg-aacatgtcataatctattttcataag 25479668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 38867894 - 38867846
Alignment:
Q  182 tgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaa 230  Q
    |||||| |||||| |||||||| |||||||||||||||||| |||||||    
T  38867894 tgttttcataagttatcttgaagaacttatgaaaataagctaaaaacaa 38867846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 10744275 - 10744384
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcata 248  Q
    |||||||||||||| |||| ||||| |||||| |||||| |||||   ||||  | ||||||| |||||||| ||||||||  ||||| || ||| ||||    
T  10744275 gataaaataaagttgaattgttttcctataagctgttttcataagctgtcttagagaacttataaaaataagatgaaaacagcttatg-aacatgccata 10744373  T
Q  249 agctattttca 259  Q
    |||| ||||||    
T  10744374 agctgttttca 10744384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 27145784 - 27145731
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataag 250  Q
    |||||||| ||||||||||||||||||||||| || |||||||  ||||||||||    
T  27145784 atcttgaagaacttatgaaaataagctgaaaa-aacttatgaacaatgtcataag 27145731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 97
Target Start/End: Original strand, 35925591 - 35925621
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcat 97  Q
    |||||||||||||||||||||||||||||||    
T  35925591 gataaacaacttaatttgcagcttatgtcat 35925621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 2777892 - 2777945
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaac 228  Q
    |||||| |||||| |||||| | |||| | ||||||||||||||||||||||||    
T  2777892 tataagctgttttaataagttaacttggagaacttatgaaaataagctgaaaac 2777945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 6556971 - 6557060
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaat-ttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| |||||| || || || ||||||||| |||||||| |||| ||  || |||||  ||||||||||||||||||||||    
T  6556971 tataagttgtttttataagttatattaaagaacttatgacaataagctaaaaaaaaccttttgaaaactgtcataagctattttcataag 6557060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 37473418 - 37473487
Alignment:
Q  190 taagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttca 259  Q
    ||||| |||||| | ||||||||||||||||||| ||| |  |||||||| |||||||||| | ||||||    
T  37473418 taagttatcttggagaacttatgaaaataagctggaaaaagcttatgaaaaatgtcataagttgttttca 37473487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 37842425 - 37842372
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaac 228  Q
    |||||| |||||| |||||  |||||||| ||||||| ||||||||||||||||    
T  37842425 tataagttgttttcataagctatcttgaagaacttataaaaataagctgaaaac 37842372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 42174855 - 42174932
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagct 252  Q
    |||||| |||||| |||||| || ||| | |||||||||||||||| | ||||||  ||||||||  |||||||||||    
T  42174855 tataagttgtttttataagttatattggagaacttatgaaaataagttaaaaacagcttatgaaaattgtcataagct 42174932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 5887064 - 5886989
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagc 251  Q
    |||||| |||||  |||||  |||||| | |||||| ||||||||||||||||||| ||||| || |||||||||||    
T  5887064 tataagctgtttctataagccatcttggagaacttacgaaaataagctgaaaacaacttatg-aacatgtcataagc 5886989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 28689501 - 28689461
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatg 236  Q
    |||||| ||| |||||||||||||||||||||||| |||||    
T  28689501 atcttggaaagcttatgaaaataagctgaaaacaacttatg 28689461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 38170728 - 38170673
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||| ||||| ||||||||||||| ||||| || |||||||||||| ||||||||||    
T  38170728 cttaggaaaacaagctgaaaacaacttatg-aacatgtcataagctgttttcataag 38170673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 41195242 - 41195183
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattt 256  Q
    |||||| | ||||||||||||||||||||||| |  |||| ||| ||||||||||||||||    
T  41195242 atcttggagaacttatgaaaataagctgaaaaaagcttattaaa-atgtcataagctattt 41195183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 47800597 - 47800676
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaac 228  Q
    ||||||||||||||||| | |||| ||||||| |||||| |||||  |||||||| | ||||||||||||||||||||||    
T  47800597 gataaaataaagttaaaatgtttttgtataagctgttttcataagctatcttgaagagcttatgaaaataagctgaaaac 47800676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 17822935 - 17822849
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcata 261  Q
    |||||| |||||| |||||  |||||| | |||||||||||||||||| |||| |  |||||||| |||||||||||| ||||||||    
T  17822935 tataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataagctgttttcata 17822849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 55414483 - 55414406
Alignment:
Q  182 tgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttca 259  Q
    |||||| |||||| |||||| | |||||||||||||||| |||||| |  |||||||| |||||||||||| ||||||    
T  55414483 tgttttcataagttatcttggagaacttatgaaaataagttgaaaaaagcttatgaaaaatgtcataagctgttttca 55414406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 23459628 - 23459715
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| |||||  ||||||||||||||||||| ||||| |||||| || ||||  || |||||||||||| ||||||||||    
T  23459628 tataagctgttttcataagagatcttgaaaaacttatgaatataagttgaaaataacttat-taacatgtcataagcttttttcataag 23459715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 50400463 - 50400547
Alignment:
Q  151 taaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttat 235  Q
    ||||||||||| ||||| | |||||||||| |||||| ||||   ||| ||||||  |||||||||||||||||||||| |||||    
T  50400463 taaaataaagtcaaattgtgttcgtataagttgttttcataaactatcatgaaaactttatgaaaataagctgaaaacagtttat 50400547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 27043933 - 27043813
Alignment:
Q  149 gataaaataaagttaaattattttcgtataag-------atgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaata 241  Q
    ||||||||||||||||||| ||||||||||||       ||||||| ||||   |||||| | ||| |||||| ||||||| ||||||||||||| |  |    
T  27043933 gataaaataaagttaaattgttttcgtataagctataagatgtttttataaactatcttggagaacgtatgaatataagctaaaaacaatttatggacga 27043834  T
Q  242 tgtcataagctattttcataa 262  Q
    || |||||||||||| |||||    
T  27043833 tgccataagctatttgcataa 27043813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 11389413 - 11389485
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataaaccatttctat 140  Q
    ||||||||||||| ||||||| |||| |||| ||  ||||||||||||||||||||| ||||||  ||||||||    
T  11389413 gataaacaactta-tttgcagtttatatcatgagtgcttatcatgataagtgcttatgtataaattatttctat 11389485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 42641815 - 42641755
Alignment:
Q  69 taaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataa 129  Q
    |||||| |||||||||||||||||  ||| ||| |||||||||||||||| |||| |||||    
T  42641815 taaacagcttaatttgcagcttattacataagcacttatcatgataagtgtttatgtataa 42641755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 55437388 - 55437333
Alignment:
Q  150 ataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaa 205  Q
    |||||||||||| ||||||||||| |||||| | |||| |||||||||| ||||||    
T  55437388 ataaaataaagtcaaattattttcatataagctattttcataagtaatcctgaaaa 55437333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 13126616 - 13126558
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||||||||||||||||||| |  |||||| | |||||||||||| |||| |||||    
T  13126616 aacttatgaaaataagctgaaaaaagcttatgataaatgtcataagctgtttttataag 13126558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 24169295 - 24169345
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctatttt 257  Q
    |||||||||||||| |||||| |  |||||||| |||||||||||||||||    
T  24169295 cttatgaaaataagttgaaaaaatcttatgaaaaatgtcataagctatttt 24169345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 25904263 - 25904205
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||| ||||||||||||||| |  |||||||| ||| |||||||| ||||||||||    
T  25904263 aacttataaaaataagctgaaaaaagcttatgaaaaatggcataagctgttttcataag 25904205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 50298417 - 50298479
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataa 129  Q
    |||||||||||||||||| |||||||  ||| | | ||||||||||||| ||||||| |||||    
T  50298417 gataaacaacttaatttgaagcttatagcataaacacttatcatgataaatgcttatgtataa 50298479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 25332805 - 25332838
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaa 238  Q
    |||||||||||||||||||||||||| |||||||    
T  25332805 aacttatgaaaataagctgaaaacaacttatgaa 25332838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 26883882 - 26883943
Alignment:
Q  68 ataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataa 129  Q
    ||||||||||||||||||||| |||  ||| ||| |||||| ||||||||| |||| |||||    
T  26883882 ataaacaacttaatttgcagcatatagcataagcgcttatcttgataagtgattatgtataa 26883943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 22539107 - 22539075
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaac 228  Q
    |||||| ||||||||||||||||||||||||||    
T  22539107 atcttgcaaaacttatgaaaataagctgaaaac 22539075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 29912956 - 29913035
Alignment:
Q  183 gttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||| |||||  |||||| | ||||||| ||||||||||||||| || | | |||| |||||| ||||||||||||||||    
T  29912956 gttttcataagctatcttggacaacttataaaaataagctgaaaagaactaaggaaaaatgtca-aagctattttcataag 29913035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 36722739 - 36722687
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaa 227  Q
    |||||| ||||||||||||| ||| |||| | |||||||||||||||| ||||    
T  36722739 tataagttgttttgataagttatcctgaagagcttatgaaaataagcttaaaa 36722687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 42461283 - 42461338
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||||| ||| ||||| || | |||||| ||||||||||||||    
T  42461283 cttatgaaaataagctgaaatcaacttatg-aacacgtcataggctattttcataag 42461338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 49939981 - 49939933
Alignment:
Q  215 aataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||  |||||||  |||||||||||| ||||||||||    
T  49939981 aataagctgaaaacagcttatgaacaatgtcataagctcttttcataag 49939933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 52315239 - 52315179
Alignment:
Q  203 aaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||||||||| ||| |||||||  |||| ||||| | |||| |||||    
T  52315239 aaaacttatgaaaataagctgaaagcaacttatgaataatgtgataagttgttttgataag 52315179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 21367666 - 21367755
Alignment:
Q  174 gtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||| |||||| |||||  |||||| | |||||||||||||||||||||||||  || ||||  |||||||||||| ||||||||||    
T  21367666 gtataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctgttttcataag 21367755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 26878235 - 26878284
Alignment:
Q  210 atgaaaataagctgaaaacaatttatgaaatatgtcataagctattttca 259  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  26878235 atgaaaataagctgaaaacagtttatgaacaatgtcataagctattttca 26878284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 35127555 - 35127494
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctata 128  Q
    |||||||| ||| |||||||||||||  ||| ||||||||||||||||||||||||| ||||    
T  35127555 gataaacagcttcatttgcagcttataccataagctcttatcatgataagtgcttatgtata 35127494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 39602280 - 39602193
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| |||||  |||||  | |||||||||||||||| ||||||||||||||| || |||||||||||| | ||||||||    
T  39602280 tataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatg-aacatgtcataagctgtcttcataag 39602193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 36887504 - 36887567
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaa 238  Q
    |||||| |||||| |||||  |||||||| |||||||||||||||||||||||||  |||||||    
T  36887504 tataagttgttttcataagccatcttgaagaacttatgaaaataagctgaaaacatcttatgaa 36887567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 402612 - 402526
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcata 261  Q
    |||||| |||||| ||||   |||||||| ||||| ||||| |||||||||||||  |||||||  |||||||||||| ||||||||    
T  402612 tataagctgtttttataatctatcttgaagaacttgtgaaattaagctgaaaacagcttatgaacaatgtcataagctgttttcata 402526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 2128354 - 2128265
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaa 238  Q
    ||||||||||||||||||| ||||  | |||| |||||| |||||  |||||  | ||| |||||||||||||||||||||  |||||||    
T  2128354 gataaaataaagttaaattgttttactgtaagctgttttcataagccatcttttagaacgtatgaaaataagctgaaaacagcttatgaa 2128265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 30574096 - 30574023
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataaaccatttctat 140  Q
    |||||||| | ||||||||||||||| |||| |||  ||||||||||||| |||||| ||||| | ||||||||    
T  30574096 gataaacaccataatttgcagcttatatcataagcatttatcatgataagcgcttatgtataagctatttctat 30574023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 52440732 - 52440653
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctatt 255  Q
    |||||| | |||| |||| | |||||||| ||||||||||||| || ||||||||| ||||| || |||||||||||||||    
T  52440732 tataagctattttcataatttatcttgaagaacttatgaaaattagttgaaaacaacttatg-aacatgtcataagctatt 52440653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 40665429 - 40665492
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaa 238  Q
    ||||||||||||| |||||| |||||| | | ||||| |||||||||||||||||  |||||||    
T  40665429 tataagatgttttcataagttatcttggagagcttataaaaataagctgaaaacagcttatgaa 40665492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 44747478 - 44747427
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaa 226  Q
    |||||| |||||| |||||  |||||| ||||||||||||||||||||||||    
T  44747478 tataagctgttttcataagctatcttggaaaacttatgaaaataagctgaaa 44747427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 30443923 - 30443981
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||||||||||||||||||| |  || |||||  ||||||||||| ||||||||||    
T  30443923 aacttatgaaaataagctgaaaaaagcttgtgaaaattgtcataagctgttttcataag 30443981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 34610846 - 34610788
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||||||||| |||||||||| | |||||||  |||||||||||  ||||||||||    
T  34610846 aacttatgaaaatcagctgaaaaccacttatgaacaatgtcataagcagttttcataag 34610788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 35394561 - 35394487
Alignment:
Q  182 tgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattt 256  Q
    |||||| |||||  |||||||| || ||||||||||||| ||||||||  |||||||  ||||||||| ||||||    
T  35394561 tgttttcataagctatcttgaagaatttatgaaaataagttgaaaacagcttatgaacaatgtcataaactattt 35394487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 35959649 - 35959588
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataa 129  Q
    |||||||| |||| |||||||||||| |||  |||||||||||||||||| |||||| |||||    
T  35959649 gataaacagctta-tttgcagcttatatcacaagctcttatcatgataagagcttatgtataa 35959588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 38902087 - 38902153
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataa 262  Q
    |||||||| |||| ||||||||||| |||||||||  ||||||  |||||||| ||| |||||||||    
T  38902087 atcttgaagaactcatgaaaataagttgaaaacaacgtatgaacaatgtcatatgctgttttcataa 38902153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 3845625 - 3845580
Alignment:
Q  182 tgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaa 227  Q
    |||||| |||||| |||||| | |||||||||||||||||||||||    
T  3845625 tgttttcataagttatcttggagaacttatgaaaataagctgaaaa 3845580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 5391910 - 5391966
Alignment:
Q  206 acttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||||||||||| ||||||||  ||||| || |||||||||||| ||||||||||    
T  5391910 acttatgaaaataagttgaaaacagcttatg-aacatgtcataagctgttttcataag 5391966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 25776117 - 25776182
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaat 240  Q
    |||||| |||||| ||||||  ||||||| |||||||| || |||||||||||||  |||||||||    
T  25776117 tataagttgttttcataagttgtcttgaagaacttatggaagtaagctgaaaacagcttatgaaat 25776182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 33883790 - 33883757
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaa 238  Q
    |||||||||||||||||||||||||| |||||||    
T  33883790 aacttatgaaaataagctgaaaacaacttatgaa 33883757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 20880506 - 20880562
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcata 261  Q
    |||||||||||||||||| |||| |  ||||||||  ||||||||||| ||||||||    
T  20880506 aacttatgaaaataagctcaaaaaagcttatgaaaattgtcataagctgttttcata 20880562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 24624202 - 24624297
Alignment:
Q  167 tattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||| ||||||||||||| ||| |  ||| |  ||| ||||||  ||||||||||||||| |||||| |  |||||||||||| ||||||||||    
T  24624202 tattttcatataagatgttttcataggctatcctagaaatcttatgttaataagctgaaaacagtttatggac-atgtcataagctgttttcataag 24624297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 39980729 - 39980817
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| |||||  || ||| | |||||||||||||||| |||||| |  ||||||||   |||||||||| ||||||||||    
T  39980729 tataagttgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatgaaaccagtcataagctgttttcataag 39980817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 41633392 - 41633420
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttat 235  Q
    |||||||||||||||||||||||||||||    
T  41633392 cttatgaaaataagctgaaaacaatttat 41633420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 50946326 - 50946294
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatga 237  Q
    |||||||||||||||||||| ||||||||||||    
T  50946326 aacttatgaaaataagctgagaacaatttatga 50946294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 26215463 - 26215530
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaa 216  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||  |||||| ||||| ||||||||    
T  26215463 gataaaataaagttaaactattttcgtataatatgttttcataagctatcttggaaaacatatgaaaa 26215530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 33808333 - 33808391
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||| ||||||| |||||||  || ||||||||||||||||||||    
T  33808333 aacttatgaaaataagctaaaaacaacttatgaacaatatcataagctattttcataag 33808391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 3536994 - 3536938
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagct 252  Q
    |||||| | |||||||| |||||||||||||||||||||||||  ||||||||||||    
T  3536994 atcttggagaacttatggaaataagctgaaaacaatttatgaacaatgtcataagct 3536938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 9956884 - 9956796
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| ||||   |||||| | |||||||||||||||||||||||| | |||||||  ||| ||||| |||||||||||||    
T  9956884 tataagttgttttcataatctatcttggagaacttatgaaaataagctgaaaactacttatgaacaatgccataaactattttcataag 9956796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 13459677 - 13459732
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||    
T  13459677 cttatgaaaataggctgaaaacagtttatgaaa-atgtcataagctgttttcataag 13459732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 30389129 - 30389184
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcata 261  Q
    |||||||||||||||||||||||||| ||||| || ||||||| |||||||||||||    
T  30389129 aacttatgaaaataagctgaaaacaacttatg-aacatgtcattagctattttcata 30389184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 10120786 - 10120844
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||||||||||   ||||| | |||||||||||| ||||||||||    
T  10120786 aacttatgaaaataagctgaaaacagcatatgataaatgtcataagctgttttcataag 10120844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 32841022 - 32840968
Alignment:
Q  209 tatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||||||| |||||||  |||||||||| | ||||||||||    
T  32841022 tatgaaaataagctgaaaacaacttatgaacaatgtcataagttgttttcataag 32840968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 3161661 - 3161606
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||| ||||||||||||||||| |||||| || |||||||||| ||||||||||||    
T  3161661 cttataaaaataagctgaaaacattttatg-aacatgtcataagttattttcataag 3161606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 27028831 - 27028915
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttca 259  Q
    |||||| |||||| |||||  |||||| | | ||||||||||||||||||||| |  |||||||| ||||| |||||| ||||||    
T  27028831 tataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatgaaaaatgtcctaagctgttttca 27028915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 31916468 - 31916516
Alignment:
Q  68 ataaacaacttaatttgcagcttatgtcattagctcttatcatgataag 116  Q
    ||||||||||| |||||||||||||| ||| ||| ||||||||||||||    
T  31916468 ataaacaacttcatttgcagcttatggcataagcgcttatcatgataag 31916516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 2840246 - 2840301
Alignment:
Q  68 ataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttat 123  Q
    |||||||||||| ||||||||||||  ||| ||  |||||||||||||||||||||    
T  2840246 ataaacaacttattttgcagcttatagcataagtgcttatcatgataagtgcttat 2840301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 2844933 - 2844988
Alignment:
Q  68 ataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttat 123  Q
    |||||||||||| ||||||||||||  ||| ||  |||||||||||||||||||||    
T  2844933 ataaacaacttattttgcagcttatagcataagtgcttatcatgataagtgcttat 2844988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 16825577 - 16825520
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||| |||||| |  ||||||||  ||||||||||||||||||||||    
T  16825577 aacttatgaaaataagttgaaaa-agcttatgaaaattgtcataagctattttcataag 16825520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 43504751 - 43504805
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaaca 229  Q
    ||||||||||||| |||||  |||||| | |||||||| ||||||||||||||||    
T  43504751 tataagatgtttttataagctatcttggagaacttatggaaataagctgaaaaca 43504805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 4762516 - 4762569
Alignment:
Q  182 tgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttat 235  Q
    |||||| |||||  |||||||| | |||||| ||||||||||||||||||||||    
T  4762516 tgttttcataagctatcttgaagagcttatgtaaataagctgaaaacaatttat 4762569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 37353287 - 37353243
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagct 252  Q
    ||||||||||||| ||||||||| |||||| |||||||||||||||    
T  37353287 cttatgaaaataatctgaaaacagtttatg-aatatgtcataagct 37353243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 10383917 - 10383972
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||||||| |||||  |||||||| |||||||||||| ||||||||||    
T  10383917 cttatggaaataagctgtaaacagcttatgaaa-atgtcataagctgttttcataag 10383972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 35644026 - 35643970
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||| |||||| |  ||||||||  |||||||| |||||||||||||    
T  35644026 cttatgaaaataagttgaaaaaagcttatgaaaattgtcataaactattttcataag 35643970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 680503 - 680589
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataa 262  Q
    |||||| | |||| |||||  |||||||| ||||| ||||||||||||||||||| ||||| ||| |||||||||||| |||||||||    
T  680503 tataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaacagtttat-aaacatgtcataagctgttttcataa 680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 16451092 - 16451206
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcata 248  Q
    |||||||| |||||||||| ||||| |||||| ||||||  ||||  |||||| | ||||  |||||||||||||||||||  | |||||  ||||||||    
T  16451092 gataaaatgaagttaaattgttttcatataagctgttttcgtaagctatcttggagaactcgtgaaaataagctgaaaacagctcatgaacaatgtcata 16451191  T
Q  249 agctattttcataag 263  Q
    || | ||||||||||    
T  16451192 agttgttttcataag 16451206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 1985453 - 1985526
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataaaccatttctat 140  Q
    |||||||||||||| |  |||||| | |||| ||| ||||||||||||||||||| | ||||||||||||||||    
T  1985453 gataaacaacttaaatcacagcttttatcataagcgcttatcatgataagtgcttttgtataaaccatttctat 1985526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 228
Target Start/End: Original strand, 4026739 - 4026870
Alignment:
Q  103 cttatcatgataagtgcttatctataaaccatttctatnnnnnnntgataaaataaagttaaattattttcg-------tataagatgttttgataagta 195  Q
    ||||||||||||||||||||||||||| | |||| |||        |||||||||||||||||||||||| |       |||||| |||||| |||| |     
T  4026739 cttatcatgataagtgcttatctataagctatttttatagcaaaa-gataaaataaagttaaattatttttgcataaattataagctgttttcataaatt 4026837  T
Q  196 atcttgaaaaacttatgaaaataagctgaaaac 228  Q
    ||| |||| ||||||||||||||||||||||||    
T  4026838 atcctgaagaacttatgaaaataagctgaaaac 4026870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 26626880 - 26626961
Alignment:
Q  182 tgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||  |||||| | ||||||||||||||| |||||||||  |||||||  |||||||||||||||||| ||||    
T  26626880 tgttttcataagctatcttgcagaacttatgaaaataacctgaaaacagattatgaacaatgtcataagctattttcgtaag 26626961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 40682435 - 40682383
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctatttt 257  Q
    |||||||||||||||| ||||||||| |||||||  |||||||||||||||||    
T  40682435 aacttatgaaaataagttgaaaacaacttatgaacaatgtcataagctatttt 40682383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 7035616 - 7035549
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| ||||||||||||||||||| |||||||  ||||||| | ||||||||||| ||| ||||||    
T  7035616 atcttggaaaacttatgaaaataagcggaaaacaccttatgaactgtgtcataagctgtttccataag 7035549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 28677755 - 28677642
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcata 248  Q
    ||||||||||||| ||| | |||  ||||||| ||| ||  ||||| || ||| | | |||||| |||||||| |||||||| |||||||| ||||||||    
T  28677755 gataaaataaagtcaaaatgtttatgtataagttgtctttgtaagttattttggagagcttatggaaataagccgaaaacaacttatgaaa-atgtcata 28677657  T
Q  249 agctattttcataag 263  Q
    |||| ||||||||||    
T  28677656 agctgttttcataag 28677642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 1493576 - 1493520
Alignment:
Q  182 tgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaa 238  Q
    |||||| |||||| ||| |||  |||||||||||||||||||||||||| |||||||    
T  1493576 tgttttcataagtcatcctgactaacttatgaaaataagctgaaaacaacttatgaa 1493520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 1625900 - 1625988
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| |||||  |||||| | |||||| |||||| |||||||||||  |||||||   |||||||||||| |||||||||    
T  1625900 tataagttgttttcataagctatcttggagaacttacgaaaatcagctgaaaacatcttatgaacattgtcataagctactttcataag 1625988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 7928348 - 7928284
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgt-cataagctattttca 259  Q
    |||||| | |||||||||||||||||||||||||| |||||||  |||| |||||||| ||||||    
T  7928348 atcttggagaacttatgaaaataagctgaaaacaacttatgaacaatgtccataagctgttttca 7928284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 26626763 - 26626826
Alignment:
Q  67 gataaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataaac 131  Q
    ||||||||||||| ||||||||||||  ||| ||||||||||||||||| | ||||| |||||||    
T  26626763 gataaacaactta-tttgcagcttatagcataagctcttatcatgataaatacttatgtataaac 26626826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 32592586 - 32592674
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| ||||| ||| ||| | |||||||||||||||| ||| || |  ||||||||  |||| |||||||||||||||||    
T  32592586 tataagttgtttttataagcaatattggagaacttatgaaaataagttgagaaaagcttatgaaaattgtcgtaagctattttcataag 32592674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 39621951 - 39622038
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| |||||| |||  || || |||| | ||||||||||||||||||||||| ||| ||||||||| | ||||||||||    
T  39621951 tataagctgttttcataagttatccggacaagcttaaggaaataagctgaaaacaatttatg-aatttgtcataagttgttttcataag 39622038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 43717174 - 43717119
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||||||||||||||||||||  ||||||| ||||| |||||| ||||||||||    
T  43717174 cttatgaaaataagctgaaaacaacctatgaaa-atgtcctaagctgttttcataag 43717119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 44590034 - 44590098
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaa 239  Q
    |||||| |||||| |||||  |||||||| ||||| ||| |||||||||||||||||||| ||||    
T  44590034 tataagttgttttcataagctatcttgaagaacttgtgagaataagctgaaaacaatttacgaaa 44590098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 8017401 - 8017521
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgt-------tttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaata 241  Q
    ||||||| ||||||||||||||||| |||||| |||       ||| |||||  |||||| | |||||||||||||| || |||||||| ||||| || |    
T  8017401 gataaaacaaagttaaattattttcatataagctgtaaactgttttcataagctatcttggagaacttatgaaaatacgcagaaaacaaattatg-aaca 8017499  T
Q  242 tgtcataagctattttcataag 263  Q
    | ||||||||| ||||||||||    
T  8017500 tatcataagctgttttcataag 8017521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 12147489 - 12147535
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctat 254  Q
    ||||||||||||| |||||||||||||||| || ||||||||||||||    
T  12147489 cttatgaaaataaactgaaaacaatttatg-aacatgtcataagctat 12147535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 29628813 - 29628750
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaa 238  Q
    |||||| |||| | |||||  |||||| |||| ||||| |||||||||||||||||||||||||    
T  29628813 tataagttgttctcataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaa 29628750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 236
Target Start/End: Complemental strand, 35993420 - 35993389
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatg 236  Q
    ||||||||||||||||||||||||||||||||    
T  35993420 aacttatgaaaataagctgaaaacaatttatg 35993389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 40279268 - 40279355
Alignment:
Q  176 ataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||| |||||| |||||  || ||| | ||||||||||||| ||||||||||| ||||||||  ||| |||||| | ||||||||||    
T  40279268 ataagttgttttcataagctatattggagaacttatgaaaattagctgaaaacagtttatgaacaatgccataagttgttttcataag 40279355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 40279338 - 40279425
Alignment:
Q  176 ataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||| |||||| |||||  || ||| | ||||||||||||| ||||||||||| ||||||||  ||| |||||| | ||||||||||    
T  40279338 ataagttgttttcataagctatattggagaacttatgaaaattagctgaaaacagtttatgaacaatgccataagttgttttcataag 40279425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 3611247 - 3611301
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataag 250  Q
    |||||| | |||||||||||||||||| |||||| ||||||||  ||||||||||    
T  3611247 atcttggagaacttatgaaaataagctaaaaacagtttatgaataatgtcataag 3611301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 12464685 - 12464750
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataa 262  Q
    |||||||| |||||||||||||||||||| ||||| |||| ||| |||| ||||||| | |||||||    
T  12464685 atcttgaagaacttatgaaaataagctgagaacaacttat-aaaaatgtgataagctttcttcataa 12464750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 13325536 - 13325566
Alignment:
Q  148 tgataaaataaagttaaattattttcgtata 178  Q
    |||||||||||||||||||||||||||||||    
T  13325536 tgataaaataaagttaaattattttcgtata 13325566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 33256774 - 33256827
Alignment:
Q  209 tatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||| |||| |||||| || |||||||||||| ||||||||||    
T  33256774 tatgaaaataagctgagaacagtttatg-aacatgtcataagctgttttcataag 33256827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 35379080 - 35378999
Alignment:
Q  181 atgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||| |||||  |||||| | | |||||||||||||||||||||||| ||||| || | ||||| |||| ||||||||||    
T  35379080 atgttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatg-aacaagtcatcagctgttttcataag 35378999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 45229541 - 45229599
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||||||||||||||||||| |  | |||||| |||||||||| | ||||||||||    
T  45229541 aacttatgaaaataagctgaaaaaagctaatgaaaaatgtcataaggtcttttcataag 45229599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 5365619 - 5365570
Alignment:
Q  203 aaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagct 252  Q
    ||||||| |||||||||||||||||||| |||||||  |||||| |||||    
T  5365619 aaaacttgtgaaaataagctgaaaacaacttatgaacaatgtcaaaagct 5365570  T

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Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 15978018 - 15978047
Alignment:
Q  208 ttatgaaaataagctgaaaacaatttatga 237  Q
    ||||||||||||||||||||||||||||||    
T  15978018 ttatgaaaataagctgaaaacaatttatga 15978047  T

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Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 18525268 - 18525220
Alignment:
Q  214 aaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||| || ||| ||| ||||||||||||||||||||||||    
T  18525268 aaataagctgaaaataacttacgaa-tatgtcataagctattttcataag 18525220  T

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Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 36236480 - 36236451
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatg 236  Q
    ||||||||||||||||||||||||||||||    
T  36236480 cttatgaaaataagctgaaaacaatttatg 36236451  T

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Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 2227196 - 2227248
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctatttt 257  Q
    |||||| ||||||||||||||||   ||||||||| |||||||||||| ||||    
T  2227196 aacttacgaaaataagctgaaaaatgtttatgaaaaatgtcataagctgtttt 2227248  T

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Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 18066128 - 18066216
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| |||||  |||||| | |||||| ||||||||| |||||| |  ||||||   |||||||||||| ||||||||||    
T  18066128 tataagctgttttcataagctatcttggagaacttaagaaaataaggtgaaaatagcttatgagcaatgtcataagctgttttcataag 18066216  T

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Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 40158750 - 40158805
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| || |||||||||||||| |||| ||| |||||||||||| ||||||||||    
T  40158750 cttatgtaattaagctgaaaacaacttat-aaacatgtcataagctgttttcataag 40158805  T

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Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 40279197 - 40279285
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| |||||  || ||| | ||||||||||||| ||||||||| | ||||||||  ||| |||||| | ||||||||||    
T  40279197 tataagttgttttcataagctatgttggagaacttatgaaaattagctgaaaatagtttatgaacaatgccataagttgttttcataag 40279285  T

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Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 43456756 - 43456716
Alignment:
Q  196 atcttgaaaaacttatgaaaataagctgaaaacaatttatg 236  Q
    |||||||||||| |||| |||||||||||||||| ||||||    
T  43456756 atcttgaaaaacatatggaaataagctgaaaacagtttatg 43456716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 43985073 - 43985021
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaa 227  Q
    |||||| |||||| |||||  |||||||| | |||||||||||||||||||||    
T  43985073 tataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaaa 43985021  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 21381 - 21311
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataa 219  Q
    ||||||||||||||||||| |||||||||||| |||||| |||||  || ||| | || ||||||||||||    
T  21381 gataaaataaagttaaattgttttcgtataagctgttttcataagctatattggagaaattatgaaaataa 21311  T

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Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 58906 - 58948
Alignment:
Q  151 taaaataaagttaaattattttcgtataagatgttttgataag 193  Q
    ||||||||||||||||| |||||||||||| |||||| |||||    
T  58906 taaaataaagttaaattgttttcgtataagctgttttcataag 58948  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 19302603 - 19302546
Alignment:
Q  205 aacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataa 262  Q
    |||||||||||||||| |||||| | |||||||||  ||||||||||| |||||||||    
T  19302603 aacttatgaaaataagttgaaaaaagtttatgaaaattgtcataagctgttttcataa 19302546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 27566737 - 27566676
Alignment:
Q  202 aaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||||||||||||||| |||||| |  || |||||  ||||||||||||||||||||||    
T  27566737 aaaaacttatgaaaataagttgaaaaaagcttgtgaaagttgtcataagctattttcataag 27566676  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 7612346 - 7612394
Alignment:
Q  68 ataaacaacttaatttgcagcttatgtcattagctcttatcatgataag 116  Q
    |||||||||||||||||||||||||  ||| ||| ||||||||||||||    
T  7612346 ataaacaacttaatttgcagcttatagcataagcacttatcatgataag 7612394  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 12110360 - 12110447
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||| |||||| |||||  |||||||| ||||||||||||||| || |||||| ||| || || |||||||||| | ||||||||||    
T  12110360 tataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaacagtttgtg-aacatgtcataagttgttttcataag 12110447  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 38499969 - 38499901
Alignment:
Q  189 ataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctatttt 257  Q
    ||||| ||||||| | ||||||||||||||||||| ||| |  |||||||| |||||||||||| ||||    
T  38499969 ataagcaatcttggagaacttatgaaaataagctggaaaaagcttatgaaaaatgtcataagctgtttt 38499901  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 44808190 - 44808249
Alignment:
Q  207 cttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataaggtct 267  Q
    |||||||||||||||||||||||  |||||  | |||||||||| ||||||||||||||||    
T  44808190 cttatgaaaataagctgaaaacaggttatg-gacatgtcataagttattttcataaggtct 44808249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 19022655 - 19022568
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataa 262  Q
    |||||| |||||| |||||  || ||| | |||||||||||||||| |||| |||| ||||||||  ||||||||| | |||||||||    
T  19022655 tataagttgtttttataagctatattggagaacttatgaaaataagttgaagacaacttatgaaaattgtcataagttgttttcataa 19022568  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 263
Target Start/End: Complemental strand, 19214491 - 19214388
Alignment:
Q  160 gttaaattattttcgtataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttatgaaatatgtcataagctattttca 259  Q
    ||||||||||||| ||||||| |||||  |||||  || ||| | |||||||||||||||| |||||  | |||||||||  ||||||  ||| ||||||    
T  19214491 gttaaattatttttgtataagttgtttgtataagctatattgtagaacttatgaaaataagttgaaacaagtttatgaaaattgtcatttgctgttttca 19214392  T
Q  260 taag 263  Q
    ||||    
T  19214391 taag 19214388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 34035954 - 34036005
Alignment:
Q  212 gaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    ||||||||| ||||||||| |||||||  |||||||||| ||||||||||||    
T  34035954 gaaaataagttgaaaacaacttatgaacaatgtcataagttattttcataag 34036005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 39591570 - 39591525
Alignment:
Q  149 gataaaataaagttaaattattttcgtataagatgttttgataagt 194  Q
    ||||||||||||| ||||| ||||| |||||| |||||||||||||    
T  39591570 gataaaataaagtcaaattgttttcatataagttgttttgataagt 39591525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 6552329 - 6552286
Alignment:
Q  208 ttatgaaaataagctgaaaacaatttatgaaatatgtcataagct 252  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||    
T  6552329 ttatgaaaataagctgaaaacagcttatg-aatatgtcataagct 6552286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 25670620 - 25670569
Alignment:
Q  211 tgaaaataagctgaaaacaatttatgaaatatgtcataagctattttcataag 263  Q
    |||||||||||||||||||||||||  || |||||||||| | ||||||||||    
T  25670620 tgaaaataagctgaaaacaatttat-taacatgtcataagttgttttcataag 25670569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 40530479 - 40530419
Alignment:
Q  175 tataagatgttttgataagtaatcttgaaaaacttatgaaaataagctgaaaacaatttat 235  Q
    |||||| |||||| |||||  ||| | || |||||||||||||||| ||||||||||||||    
T  40530479 tataagttgttttaataagctatcctaaagaacttatgaaaataagttgaaaacaatttat 40530419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 46139831 - 46139890
Alignment:
Q  69 taaacaacttaatttgcagcttatgtcattagctcttatcatgataagtgcttatctataa 129  Q
    ||||||||||| ||||||||||||  ||  ||| |||||||||||||||| ||||||||||    
T  46139831 taaacaactta-tttgcagcttataacacaagcacttatcatgataagtgattatctataa 46139890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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