View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_23 (Length: 266)
Name: NF3071_low_23
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 5778662 - 5778427
Alignment:
| Q |
21 |
tgcggcaagtgtatgatgtcatgatccgttggccgcacataatccggatccgattctatttgttttgtcattgttatatacaagatatttgtcataaaag |
120 |
Q |
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| T |
5778662 |
tgcggcaaatgtatgttgtcatgatccgttggccgcacataatccggatccgattctatttgttttgtcattgttatatacaagatatttgtcataaaag |
5778563 |
T |
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| Q |
121 |
actatgaagtagtgagacatacatgaacaacagacacgtcactgacaatgacacttatacatcaaaactagtggtaatttgagacaataaatcaattgaa |
220 |
Q |
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| T |
5778562 |
actatgaagcagtgacacatacatgaacaatagacacgtcactgacaatgacacttatacatcgaaactagtggtaatttgagacaataaatcaattgaa |
5778463 |
T |
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| Q |
221 |
tgtaatcacatgtgctgctgtgtgtccttgtctgtg |
256 |
Q |
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| T |
5778462 |
tgtaatcacatgtgctgctgtgtgtccttgtctgtg |
5778427 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 28322244 - 28322291
Alignment:
| Q |
187 |
actagtggtaatttgagacaataaatcaattgaatgtaatcacatgtg |
234 |
Q |
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| T |
28322244 |
actagtgataatttgagaaaatgaattaattgaatgtaatcacatgtg |
28322291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 5461217 - 5461181
Alignment:
| Q |
195 |
taatttgagacaataaatcaattgaatgtaatcacat |
231 |
Q |
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| T |
5461217 |
taatttgagataataaattaattgaatgtaatcacat |
5461181 |
T |
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