View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3071_low_24 (Length: 264)

Name: NF3071_low_24
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3071_low_24
NF3071_low_24
[»] chr8 (1 HSPs)
chr8 (40-257)||(15247834-15248051)
[»] chr1 (1 HSPs)
chr1 (146-256)||(28024328-28024438)
[»] chr5 (1 HSPs)
chr5 (151-250)||(503699-503798)
[»] chr6 (1 HSPs)
chr6 (158-219)||(23764695-23764756)
[»] chr3 (1 HSPs)
chr3 (164-256)||(48949162-48949254)
[»] chr7 (2 HSPs)
chr7 (146-216)||(32274457-32274527)
chr7 (146-179)||(32005741-32005774)
[»] chr2 (1 HSPs)
chr2 (146-251)||(37988643-37988749)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 15247834 - 15248051
Alignment:
Q  40 aaaataacttataattaacttacgaaaaacaatttaactttatannnnnnngctatagaaactatttatacataaacacttatcatatttatccaaacaa 139  Q
    |||| |||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15247834 aaaacaacttataattaacgtacgaaaaacaatttaactttatatttttttgctatagaaactatttatacataaacacttatcatatttatccaaacaa 15247933  T
Q  140 gcctacgtggctgtttggtttggtggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaagcttaaaattatggctttaggca 239  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  15247934 gcctacgtggctgtttggtttggtggtgggagcacaaatatcaggtcccaatgctccaccaccgtgatttttatgaagcttaaaattgtggctttaggca 15248033  T
Q  240 aaacgtgcgtctgtgctc 257  Q
    ||||||||||||||||||    
T  15248034 aaacgtgcgtctgtgctc 15248051  T

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Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 28024438 - 28024328
Alignment:
Q  146 gtggctgtttggtttggtggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaagcttaaaattatggctttaggcaaaacgt 245  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||||||| ||| |||  |||||||||    
T  28024438 gtggctgtttggtttggtggtgggagcacaaatatcgcgtcccaatgctccactgccgtgatttttatgaagcttaaaattgtggatttttgcaaaacgt 28024339  T
Q  246 gcgtctgtgct 256  Q
    |||||||||||    
T  28024338 gcgtctgtgct 28024328  T

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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 503798 - 503699
Alignment:
Q  151 tgtttggtttggtggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaagcttaaaattatggctttaggcaaaacgtgcgtc 250  Q
    |||||||||||||||||||| || ||||||| ||||||||| ||| ||||| ||||||||||||||||| |||||  | | |||| ||||||||||||||    
T  503798 tgtttggtttggtggtgggaacaaaaatatcgcgtcccaatgctcaaccactgtgatttttatgaagctcaaaatagtagatttaagcaaaacgtgcgtc 503699  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 23764695 - 23764756
Alignment:
Q  158 tttggtggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaagct 219  Q
    |||||||||||| ||||||||||| |||||||||| || || ||||||||||||||||||||    
T  23764695 tttggtggtgggggcacaaatatctcgtcccaatattcaactaccgtgatttttatgaagct 23764756  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 48949254 - 48949162
Alignment:
Q  164 ggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaagcttaaaattatggctttaggcaaaacgtgcgtctgtgct 256  Q
    ||||| |||| ||||||||| ||||||| ||| || ||||||||||||| |||||| |||||  ||||||| |||| ||||||||||| ||||    
T  48949254 ggtggaagcataaatatcacatcccaatgctcaactaccgtgatttttaagaagctcaaaatagtggctttgggcagaacgtgcgtctatgct 48949162  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 32274527 - 32274457
Alignment:
Q  146 gtggctgtttggtttggtggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaa 216  Q
    |||| ||||||||||||| |||| | || ||||||||||||||||| ||| || |||||| ||||||||||    
T  32274527 gtggttgtttggtttggtcgtggaaacaaaaatatcacgtcccaatgctcaactaccgtggtttttatgaa 32274457  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 32005774 - 32005741
Alignment:
Q  146 gtggctgtttggtttggtggtgggagcacaaata 179  Q
    ||||||||||||||||||||||||||||||||||    
T  32005774 gtggctgtttggtttggtggtgggagcacaaata 32005741  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 37988749 - 37988643
Alignment:
Q  146 gtggctgtttggtttggtggtgggagcacaaatatcacgtcccaatactccaccaccgtgatttttatgaagcttaaaatta-tggctttaggcaaaacg 244  Q
    |||||| |||||||||||||||| |||||||||||||| |  ||||  || || |||||||||||  ||||||| || |||| | ||||| | ||||||     
T  37988749 gtggctatttggtttggtggtggaagcacaaatatcacttttcaatgttcaactaccgtgattttggtgaagctcaagattagtagctttggtcaaaaca 37988650  T
Q  245 tgcgtct 251  Q
    |||||||    
T  37988649 tgcgtct 37988643  T

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