View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_25 (Length: 262)
Name: NF3071_low_25
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 54154509 - 54154295
Alignment:
| Q |
20 |
aacaggtttgttgttatagttttggtattttcaagaagagtcttttaacaataatgcaattgtagttgtttttatgttaattaaaaatgtgttcttcctc |
119 |
Q |
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| T |
54154509 |
aacaggtttgttgttatagttttggtattttcaagaagagtcttt-aacaataatgcaattgtagttgtttttatgttaattaaaaatgtgttcttcctc |
54154411 |
T |
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| Q |
120 |
tttgtcaccattgcatcaagaagtcatgtgtatttatggttacccgtaaattaagtattagaaaaagataatcctttttaggtaacctagacagcagtca |
219 |
Q |
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| T |
54154410 |
tttgtcaccattgcatcaagaagtcatgtgtatttatggttacccgtaaattaagtattagaaaaagataatcc-ttttaggtaacctagacagcagtca |
54154312 |
T |
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| Q |
220 |
cctaaagacagccacaa |
236 |
Q |
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| T |
54154311 |
cctaaagacagtcacaa |
54154295 |
T |
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Back To:
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 1139772 - 1139831
Alignment:
| Q |
23 |
aggtttgttgttatagttttggtattttcaagaagagtcttttaacaataatgcaattgta |
83 |
Q |
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| T |
1139772 |
aggtttgttgttaaagttttgatatttttaaaaagagtc-tttaacaacaatgcaattgta |
1139831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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