View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3071_low_3 (Length: 596)
Name: NF3071_low_3
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 19 - 585
Target Start/End: Complemental strand, 31199500 - 31198934
Alignment:
| Q |
19 |
caatgaccgtcattgtgatgattagcttcatcattattattcttgttgtagaatattggggctcaaaataaactgccaaagcccaaaaacaactttctgt |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31199500 |
caatgaccgtcattgtgatgatttgcttcatcattattattcttgttgtagaatattggggctcaatataaactgccaaagcccaaaaacaactttctgt |
31199401 |
T |
|
| Q |
119 |
cagcctatctcgtgcatacggtagtttattacggacattcaacaccttccaccatctgtgaaaaccaaaacaatcatattaatcacaaggactactctaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31199400 |
cagcctatctcgtgcatacggtagtttattacggacactcaactccttccaccatctgtgaaaaccaaaacaatgatattaatcacaaggactactctaa |
31199301 |
T |
|
| Q |
219 |
aatacattaataatttttccaattcacgaaagtgtagtccttacttgcaaactttaccaaattccttctgatgcagtctttggagcatattgaaatctag |
318 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31199300 |
atcacattaataatttttccaattcacgaaagtgtagtccttacttgcaaactttaccaaattccttctgatgcaatctttggagcatattgaaatctag |
31199201 |
T |
|
| Q |
319 |
tttcgccaaaaggagtaaatttttatcatgggagggatctttctcatatatgaaaatgtactttctggcctcgagccgaggcaagttcttatagagagct |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31199200 |
tttcgccaaaaggagtaaatttttatcatgggaaggatcttgctcatatatgaaaatgtagtttctggcctcgagccgaggcaagttcttatagagagct |
31199101 |
T |
|
| Q |
419 |
tgtcttaagctgttttttacttgtattgcatgagaattgctcaattgattggcgatggattgaaggtgagtggtagtgaaagccaaagcctcttccaaaa |
518 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31199100 |
tgtcttaagctattttttacttgtattgcatgagaattgctcaattgattggcgatggattgaaggtgagtggtagtgaaagccaaagcctcttccaaaa |
31199001 |
T |
|
| Q |
519 |
tgtcctctccatgaaccatgagttgtgtggcttcatacaagcttaacatcccctcaacatcccctat |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31199000 |
tgtcctctccatgaaccatgagttgtgtggcttcatacaagcttaacagcccctcaacatcccctat |
31198934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 257 - 579
Target Start/End: Complemental strand, 31160072 - 31159750
Alignment:
| Q |
257 |
ccttacttgcaaactttaccaaattccttctgatgcagtctttggagcatattgaaatctagtttcgccaaaaggagtaaatttttatcatgggagggat |
356 |
Q |
| |
|
||||||||| ||| || || |||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||| |||| |||||| || |||| |
|
|
| T |
31160072 |
ccttacttgtaaaggttgccgaattccttttgatgtatactttggagcatattgaaatctagtttcgccaaaataagtaagttttcatcatgcgaaggat |
31159973 |
T |
|
| Q |
357 |
ctttctcatatatgaaaatgtactttctggcctcgagccgaggcaagttcttatagagagcttgtcttaagctgttttttacttgtattgcatgagaatt |
456 |
Q |
| |
|
| | ||| |||||||||||||| ||| ||||| |||| |||||||||||| | ||||||||| ||||||| || ||| |||||| || | ||| || |
|
|
| T |
31159972 |
cctcctcgtatatgaaaatgtagcttcgtgcctctagcctaggcaagttcttgtggagagcttgccttaagcagtgtttgacttgtgttacgcgaggatg |
31159873 |
T |
|
| Q |
457 |
gctcaattgattggcgatggattgaaggtgagtggtagtgaaagccaaagcctcttccaaaatgtcctctccatgaaccatgagttgtgtggcttcatac |
556 |
Q |
| |
|
|||| ||| ||||| | | | ||||||||||||||||||||||| || ||||| ||||| |||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
31159872 |
gctcgattcgttggcaacaaagtccaggtgagtggtagtgaaagccaaggcatcttctaaaatatcctctccttgaaccatgagatgtgtagcttcatac |
31159773 |
T |
|
| Q |
557 |
aagcttaacatcccctcaacatc |
579 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31159772 |
aagcttaacatcccctcaacatc |
31159750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 258 - 578
Target Start/End: Original strand, 41318295 - 41318621
Alignment:
| Q |
258 |
cttacttgcaaactttaccaaattccttctgatgcagtctttggagcatattgaaatctagtttcgccaaaaggagtaaatttttatcatgggagggatc |
357 |
Q |
| |
|
|||||||| ||| |||| ||||||||| ||||| | |||||||||||||||||||||||||| ||||||| |||||||||||| | ||| || ||||| |
|
|
| T |
41318295 |
cttacttgtaaaagttactaaattccttttgatgtaaactttggagcatattgaaatctagttttgccaaaatgagtaaatttttgttatgtgaaggatc |
41318394 |
T |
|
| Q |
358 |
tttctcatatatgaaaatgtactttctggcctcgagccgaggcaagttcttatagagagcttgtcttaagctgttttttacttgtattgc------atga |
451 |
Q |
| |
|
|| ||||||||| ||||||| |||| ||||| | || ||||||||| |||| ||| | || ||||||| | ||| ||||||| ||| |||| |
|
|
| T |
41318395 |
ttgctcatatatagaaatgtagtttcgtgcctccaacctaggcaagtttttatggagggtctgccttaagcaatgtttgacttgtaatgcttgaggatga |
41318494 |
T |
|
| Q |
452 |
gaattgctcaattgattggcgatggattgaaggtgagtggtagtgaaagccaaagcctcttccaaaatgtcctctccatgaaccatgagttgtgtggctt |
551 |
Q |
| |
|
| || | ||||||| |||| || || | ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41318495 |
ggatggttcaattgcttggtaatagactcaaggtgagtggtagtgaaaaccaaggcctcttccaaaatgtcctctccatgaaccatgacatgtgtggctt |
41318594 |
T |
|
| Q |
552 |
catacaagcttaacatcccctcaacat |
578 |
Q |
| |
|
|||| |||||||| ||||||||||||| |
|
|
| T |
41318595 |
cataaaagcttaaaatcccctcaacat |
41318621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 258 - 576
Target Start/End: Original strand, 41351654 - 41351972
Alignment:
| Q |
258 |
cttacttgcaaactttaccaaattccttctgatgcagtctttggagcatattgaaatctagtttcgccaaaaggagtaaatttttatcatgggagggatc |
357 |
Q |
| |
|
|||||||||||| || |||||||||||| |||||| ||||| |||||||||||||||| ||| ||||||||||||||| ||| || |||||| ||||| |
|
|
| T |
41351654 |
cttacttgcaaaagtttccaaattccttccgatgcaagctttgaagcatattgaaatctaattttgccaaaaggagtaaaatttcattatgggaaggatc |
41351753 |
T |
|
| Q |
358 |
tttctcatatatgaaaatgtactttctggcctcgagccgaggcaagttcttatagagagcttgtcttaagctgttttttacttgtattgcatgagaattg |
457 |
Q |
| |
|
|| ||| |||||| |||| || || || || |||| |||||| ||||||| ||||| |||||||| || | | | ||||||||||||| |||| | |
|
|
| T |
41351754 |
ttgctcgtatatgtaaatatagttgtgtgcttcaagcctaggcaaattcttatgaagagcctgtcttaaactatgtctgacttgtattgcatttgaatgg |
41351853 |
T |
|
| Q |
458 |
ctcaattgattggcgatggattgaaggtgagtggtagtgaaagccaaagcctcttccaaaatgtcctctccatgaaccatgagttgtgtggcttcataca |
557 |
Q |
| |
|
|| || ||||| ||||| | ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| | | |||||||||||||| | |
|
|
| T |
41351854 |
cttgtctggttggcaatggactcaaggtgagtggtagtgaaagctaaagcctcttctaaaatgtcatctccatgaactctaacatgtgtggcttcatata |
41351953 |
T |
|
| Q |
558 |
agcttaacatcccctcaac |
576 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
41351954 |
ggcttaacattccctcaac |
41351972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 258 - 579
Target Start/End: Complemental strand, 25832883 - 25832562
Alignment:
| Q |
258 |
cttacttgcaaactttaccaaattccttctgatgcagtctttggagcatattgaaatctagtttcgccaaaaggagtaaatttttatcatgggagggatc |
357 |
Q |
| |
|
|||||||||||| || ||||| || || ||||| || |||||||||| ||| ||||||| |||||||||| ||||| | ||| |||||| || |||| |
|
|
| T |
25832883 |
cttacttgcaaatgtttccaaactctttttgatgtaggctttggagcaaattaaaatctaatttcgccaaagtgagtagaatttcatcatgcgaaggatt |
25832784 |
T |
|
| Q |
358 |
tttctcatatatgaaaatgtactttctggcctcgagccgaggcaagttcttatagagagcttgtcttaagctgttttttacttgtattgcatgagaattg |
457 |
Q |
| |
|
|| |||||| || |||||||| || ||||| |||| ||||||||||| | |||||| |||||||| | ||| |||||| |||| || | | |
|
|
| T |
25832783 |
ttgctcataaatagaaatgtaccgtcgtgcctctagccttggcaagttcttgtggagagcctgtcttaaagcatatttgacttgtgctgcaagaaagtga |
25832684 |
T |
|
| Q |
458 |
ctcaattgattggcgatggattgaaggtgagtggtagtgaaagccaaagcctcttccaaaatgtcctctccatgaaccatgagttgtgtggcttcataca |
557 |
Q |
| |
|
|||| ||| |||| ||||| | ||||||||||| || || ||||| |||||||||||||| ||||||||||||| || | |||| ||| ||||||| |
|
|
| T |
25832683 |
ctcatttgggtggcaatggactcaaggtgagtggatgtaaatgccaatgcctcttccaaaatttcctctccatgaataatcatatgtgaggcctcataca |
25832584 |
T |
|
| Q |
558 |
agcttaacatcccctcaacatc |
579 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
25832583 |
agcttaacatcccttcgacatc |
25832562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 41351479 - 41351588
Alignment:
| Q |
66 |
gtagaatattggggctcaaaataaactgccaaagcccaaaaacaactttctgtcagcctatctcgtgcatacggtagtttattacggacattcaacacct |
165 |
Q |
| |
|
|||||||||||||| |||||||| | |||| ||||||||||||||||| | | |||||| |||||| | ||||||||| | | | || |||| ||| |
|
|
| T |
41351479 |
gtagaatattggggttcaaaatatatccccaatgcccaaaaacaactttcagcaatcctatcacgtgcaaatggtagtttaccatgcagatccaactcct |
41351578 |
T |
|
| Q |
166 |
tccaccatct |
175 |
Q |
| |
|
|||||||||| |
|
|
| T |
41351579 |
tccaccatct |
41351588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 254 - 581
Target Start/End: Complemental strand, 25792793 - 25792466
Alignment:
| Q |
254 |
agtccttacttgcaaactttaccaaattccttctgatgcagtctttggagcatattgaaatctagtttcgccaaaaggagtaaatttttatcatgggagg |
353 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| || ||||||| || |||||||| | ||| || |||| ||||||||||| |||| | || | |
|
|
| T |
25792793 |
agtccttacttgcaaaggttaccaaattccttttgatgtagggtttggagtatgttgaaatccaatttagctaaaatgagtaaattttcatcacgcgaag |
25792694 |
T |
|
| Q |
354 |
gatctttctcatatatgaaaatgtactttctggcctcgagccgaggcaagttcttatagagagcttgtcttaagctgttttttacttgtattgcatgaga |
453 |
Q |
| |
|
||||| ||| |||||| ||||||| || ||||| | || |||||| ||||| | ||||||||| |||||||| | ||| ||||||| |||| | | |
|
|
| T |
25792693 |
gatctagctcgtatatggaaatgtagcgtcgtgcctctaacctaggcaaattcttgtggagagcttgccttaagctatgtttgacttgtactgcacgcgg |
25792594 |
T |
|
| Q |
454 |
attgctcaattgattggcgatggattgaaggtgagtggtagtgaaagccaaagcctcttccaaaatgtcctctccatgaaccatgagttgtgtggcttca |
553 |
Q |
| |
|
|| |||||||| ||||| ||||| | |||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||| |||||||||||| |
|
|
| T |
25792593 |
atgactcaattgcttggcaatggactcaaggtgagtggtagtgaaagccaaggcctcttccaaaataccctctccgtgaatcatgacatgtgtggcttca |
25792494 |
T |
|
| Q |
554 |
tacaagcttaacatcccctcaacatccc |
581 |
Q |
| |
|
||||||| ||||||| |||||||||||| |
|
|
| T |
25792493 |
tacaagcataacatctcctcaacatccc |
25792466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 258 - 579
Target Start/End: Complemental strand, 2326940 - 2326619
Alignment:
| Q |
258 |
cttacttgcaaactttaccaaattccttctgatgcagtctttggagcatattgaaatctagtttcgccaaaaggagtaaatttttatcatgggagggatc |
357 |
Q |
| |
|
|||||||||||| ||| || |||||||| |||| || | |||||| ||||||||||| | ||| |||||| ||||| | ||| || || || ||||| |
|
|
| T |
2326940 |
cttacttgcaaatttttccgaattcctttcgatgaagacattggagaatattgaaatccaattttgccaaagtgagtagagtttcattgtgtgaaggatc |
2326841 |
T |
|
| Q |
358 |
tttctcatatatgaaaatgtactttctggcctcgagccgaggcaagttcttatagagagcttgtcttaagctgttttttacttgtattgcatgagaattg |
457 |
Q |
| |
|
||||||||| || |||||||| ||| ||||| |||| | | |||||| ||| |||||| || ||||||| | ||| |||||| |||| || || |
|
|
| T |
2326840 |
tttctcatagattgaaatgtaccttcgtgcctctagcctatggaagttcctatggagagcctgctttaagctatgtttgacttgtgctgcaagaaaagga |
2326741 |
T |
|
| Q |
458 |
ctcaattgattggcgatggattgaaggtgagtggtagtgaaagccaaagcctcttccaaaatgtcctctccatgaaccatgagttgtgtggcttcataca |
557 |
Q |
| |
|
|||||||| | | ||||| | |||||||| | ||| |||||||| |||| |||||| || ||||||||||||||||| | |||| ||||||||||| |
|
|
| T |
2326740 |
ctcaattgggtaacaatggactcgaggtgagttgaagtaaaagccaatgccttttccaagatctcctctccatgaaccatcatatgtgaggcttcataca |
2326641 |
T |
|
| Q |
558 |
agcttaacatcccctcaacatc |
579 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2326640 |
agcttaacatcccctcaacatc |
2326619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 576
Target Start/End: Original strand, 14266920 - 14267014
Alignment:
| Q |
482 |
aggtgagtggtagtgaaagccaaagcctcttccaaaatgtcctctccatgaaccatgagttgtgtggcttcatacaagcttaacatcccctcaac |
576 |
Q |
| |
|
|||||||||| ||| || |||| ||||||||||||||||| ||| ||||||| || | |||| |||||||||||||||| |||||| ||||| |
|
|
| T |
14266920 |
aggtgagtggaagtaaaccccaatgcctcttccaaaatgtcttcttcatgaacgatcatatgtgaagcttcatacaagcttagcatcccttcaac |
14267014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 408
Target Start/End: Original strand, 14266696 - 14266846
Alignment:
| Q |
258 |
cttacttgcaaactttaccaaattccttctgatgcagtctttggagcatattgaaatctagtttcgccaaaaggagtaaatttttatcatgggagggatc |
357 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| || |||||||||| ||| ||||||| ||||| ||| ||||| | ||| || |||||| ||||| |
|
|
| T |
14266696 |
cttacttgcaaatgttaccaaattctttttgatgtaggctttggagcaaattaaaatctaatttcgagaaagtgagtagaatttcattatgggatggatc |
14266795 |
T |
|
| Q |
358 |
tttctcatatatgaaaatgtactttctggcctcgagccgaggcaagttctt |
408 |
Q |
| |
|
|| ||| || || ||||||| | || ||||| |||| |||||| ||||| |
|
|
| T |
14266796 |
ttgctcgtagatagaaatgtaatgtcgtgcctctagcctaggcaaattctt |
14266846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 359
Target Start/End: Original strand, 17827933 - 17828035
Alignment:
| Q |
257 |
ccttacttgcaaactttaccaaattccttctgatgcagtctttggagcatattgaaatctagtttcgccaaaaggagtaaatttttatcatgggagggat |
356 |
Q |
| |
|
||||||||| ||| ||||||||||| | ||||| || ||||||||||||||||||||||||| || |||| ||||||||||| || ||| || |||| |
|
|
| T |
17827933 |
ccttacttggaaaagttaccaaattcttcttgatgtagactttggagcatattgaaatctagttgtgctaaaatgagtaaattttcattatgcgaaggat |
17828032 |
T |
|
| Q |
357 |
ctt |
359 |
Q |
| |
|
||| |
|
|
| T |
17828033 |
ctt |
17828035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 521 - 579
Target Start/End: Complemental strand, 31603360 - 31603302
Alignment:
| Q |
521 |
tcctctccatgaaccatgagttgtgtggcttcatacaagcttaacatcccctcaacatc |
579 |
Q |
| |
|
||||||||||||| | | | ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
31603360 |
tcctctccatgaatcctcatatgtgtggcttcatacaaacttagcatcccctcaacatc |
31603302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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