View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3071_low_32 (Length: 237)

Name: NF3071_low_32
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3071_low_32
NF3071_low_32
[»] scaffold0591 (2 HSPs)
scaffold0591 (128-222)||(6747-6841)
scaffold0591 (4-52)||(6917-6965)
[»] chr8 (8 HSPs)
chr8 (128-222)||(28651894-28651988)
chr8 (128-222)||(28625268-28625362)
chr8 (128-222)||(28642942-28643036)
chr8 (130-222)||(28699217-28699307)
chr8 (165-222)||(28710285-28710342)
chr8 (165-222)||(28717632-28717689)
chr8 (168-222)||(28725062-28725116)
chr8 (169-222)||(28739030-28739083)
[»] chr7 (1 HSPs)
chr7 (169-222)||(49109579-49109632)
[»] chr6 (1 HSPs)
chr6 (165-222)||(29647743-29647800)


Alignment Details
Target: scaffold0591 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 6841 - 6747
Alignment:
Q  128 aaatatttctttgagtatgataaataatatcatttaaaggtcataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 222  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6841 aaatatttctttgagtatgataaatagtatcatttaaaggtcataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 6747  T

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Target: scaffold0591; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 6965 - 6917
Alignment:
Q  4 actctcatagcctaaagttttaatgggtacaataacaccacattacttc 52  Q
    |||||||||||||||||||| ||||| |||||||||||||||| |||||    
T  6965 actctcatagcctaaagtttcaatggatacaataacaccacatcacttc 6917  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 28651894 - 28651988
Alignment:
Q  128 aaatatttctttgagtatgataaataatatcatttaaaggtcataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 222  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  28651894 aaatatttctttgagtatgataaatagtataatttaaaagtcataccaagataagaagggacatgttgaatgacatgaggcaagtcgaaattgat 28651988  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 28625268 - 28625362
Alignment:
Q  128 aaatatttctttgagtatgataaataatatcatttaaaggtcataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 222  Q
    |||||||||||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||    
T  28625268 aaatatttctttgagtatgataaatagtaacatttaaaggtcataccgggatatgagggggcatgttgaatgacatgaggcaagttgaaattgat 28625362  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 28642942 - 28643036
Alignment:
Q  128 aaatatttctttgagtatgataaataatatcatttaaaggtcataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 222  Q
    ||||||||| |||||||||||||||| ||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  28642942 aaatatttcattgagtatgataaatagtataatttaaaagtcataccaagataagaagggacatgttgaatgacatgaggcaagtcgaaattgat 28643036  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 28699217 - 28699307
Alignment:
Q  130 atatttctttgagtatgataaataatatcatttaaaggtcataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 222  Q
    ||||||||||||| ||||||||||| ||  ||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  28699217 atatttctttgagaatgataaataacat--tttaaagatcataccaggatacgagggggcatgttgaatgacatgaggcaagtcgaaattgat 28699307  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 28710285 - 28710342
Alignment:
Q  165 aggtcataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 222  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  28710285 aggtcataccaggataaagaggggcatgttgaatgacatgaggcaagtcgaaattgat 28710342  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 28717632 - 28717689
Alignment:
Q  165 aggtcataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 222  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  28717632 aggtcataccaggataaagaggggcatgttgaatgacatgaggcaagtcgaaattgat 28717689  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 28725062 - 28725116
Alignment:
Q  168 tcataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 222  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  28725062 tcataccaggataagaaggggcatgttgaatgacatgaggtaagtcaaaattgat 28725116  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 28739030 - 28739083
Alignment:
Q  169 cataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 222  Q
    |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||    
T  28739030 cataccagaatatgaaggggcatgttgaatgacatgacgcaagtcgaaattgat 28739083  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 49109579 - 49109632
Alignment:
Q  169 cataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 222  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  49109579 cataccaggataggaaggggcatgttgtatgacatgaggcaagtcgaaattgat 49109632  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 29647800 - 29647743
Alignment:
Q  165 aggtcataccaggataagaaggggcatgttgaatgacatgaggcaagtcgaaattgat 222  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  29647800 aggtcataccaggataggaaggagcatgttgtatgacatgaggcaagtcgaaattgat 29647743  T

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