View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3071_low_33 (Length: 237)
Name: NF3071_low_33
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15247675 - 15247455
Alignment:
| Q |
1 |
ttttttagatattaataaatttaggaagaagaggtaatattttattttaagtatacataaatttgc-tttccatatttcatcatggatattataaatcct |
99 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||| |||||||| |
|
|
| T |
15247675 |
ttttttggatattaataaatttaggatgaagaggtaatattttattttaagtatacataaatttacgtttctacatttcatcatggatatcgtaaatcct |
15247576 |
T |
|
| Q |
100 |
tnnnnnnnnnnncatggatgtaagacacataaggtgggttcacccttctcaatcgaattttttctatattcattacctagagatcaaacctcttacccca |
199 |
Q |
| |
|
| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15247575 |
tataaaaaa---catggatgtgagacacataaggtgagttcacccttctcaatcgaattttttctatattcattacctggagatcaaacctcttacccca |
15247479 |
T |
|
| Q |
200 |
tgatctgtgttttaaagtccaaac |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
15247478 |
tgatctgtgttttaaagtccaaac |
15247455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University