View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_38 (Length: 228)
Name: NF3071_low_38
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_38 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 8449054 - 8449281
Alignment:
| Q |
1 |
cagaatttctaataaggcctctgaatccagctcgttgaggtgttcctagacaactccaatccacgttgagaatgtggcacgagtgattgtaacagttcca |
100 |
Q |
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| T |
8449054 |
cagaatttctaataaggcctctgaatccagctcgttgaggtgttcctagacaactccaatccaagttgagaatgtggcacgagtgattgtaacagttcca |
8449153 |
T |
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| Q |
101 |
cttgataaaacgctctagtatcaacagttccttgcttaatgacttcggacgaatttttgatggtgaaagatagcctgtttagagaccaaacctgatttat |
200 |
Q |
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| T |
8449154 |
cttgataaaacgctctagtatcaacagttccttgcttaatgacttcggacgaatttttgatggtgaaagatagcctgtttagagaccaaacctgatttat |
8449253 |
T |
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| Q |
201 |
gtccaaaaatatgattgtgatattaaac |
228 |
Q |
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| T |
8449254 |
gtccaaaaatatgattgtgatattaaac |
8449281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 8448971 - 8449046
Alignment:
| Q |
1 |
cagaatttctaataaggcctctgaatccagctcgttgaggtgttcctagacaactccaatccacgttgagaatgtg |
76 |
Q |
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| T |
8448971 |
cagaatttctaataaggcctctgaatccagctcgttgaggtgttcgtagacaactccaatccacgttgagaatgtg |
8449046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 8430170 - 8430130
Alignment:
| Q |
188 |
aaacctgatttatgtccaaaaatatgattgtgatattaaac |
228 |
Q |
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| T |
8430170 |
aaacctgatttatgtccaaaaatatgattgtgatattaaac |
8430130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28046435 - 28046346
Alignment:
| Q |
1 |
cagaatttctaataaggcctctgaatccagctcgttgaggtgttcctagacaactccaatccacgttgagaatgtggcacgagtgattgt |
90 |
Q |
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| T |
28046435 |
cagaatatctcatgaggcctctgaagccagctcgttgaggtgttccaagaaaactcccatccacgttaagaatgtggcacgattgattgt |
28046346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 31847864 - 31847749
Alignment:
| Q |
1 |
cagaatttctaataaggcctctgaatccagctcgttgaggtgttcctagacaactccaatccacgttgagaatgtggcacgagtgattgtaacagttcca |
100 |
Q |
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||||||||||||| || |||| || ||| ||| ||| || ||||||||| | |||| ||||||||||||||| ||| ||||||||| ||||||||| |
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| T |
31847864 |
cagaatttctaatgagacctccaaagccatctcattgtggagttcctagatagctcccctccacgttgagaatggtgcaggagtgattgagacagttcca |
31847765 |
T |
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| Q |
101 |
cttgataaaacgctct |
116 |
Q |
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| T |
31847764 |
cttgataaaacactct |
31847749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 7382 - 7418
Alignment:
| Q |
192 |
ctgatttatgtccaaaaatatgattgtgatattaaac |
228 |
Q |
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| T |
7382 |
ctgatttatgtccaaaaatatgattgtgatattaaac |
7418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 11969229 - 11969145
Alignment:
| Q |
27 |
ccagctcgttgaggtgttcctagacaactccaatccacgttgagaatgtggcacgagtgattgtaacagttccacttgataaaac |
111 |
Q |
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| T |
11969229 |
ccagctcgttgtggtgttcctagacagctcccatctacgttgagaatagtgcaggaatgattttgacaattccacatgataaaac |
11969145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 30913185 - 30913266
Alignment:
| Q |
29 |
agctcgttgaggtgttcctagacaactccaatccacgttgagaatgtggcacgagtgattgtaacagttccacttgataaaa |
110 |
Q |
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| T |
30913185 |
agctcgttgcggtgtttctagacagctcctgtcaacgttgagaatggtgcaaaagtgattaggacagttccacttgataaaa |
30913266 |
T |
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