View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_4 (Length: 579)
Name: NF3071_low_4
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 212 - 563
Target Start/End: Original strand, 23444864 - 23445212
Alignment:
| Q |
212 |
gttgttttacaaatatcatttttatannnnnnnnatcaataaaaagagattnnnnnnnnnttatcaccaaagtatcactggtctatcacatgaaaggaaa |
311 |
Q |
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| T |
23444864 |
gttgttttacaaatatcatttttatattttttt-atcaataaaaagagattaaaaaaaaattatcaccaaagtatcactggtctatcacatgaaaggaaa |
23444962 |
T |
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| Q |
312 |
aagagcatctgggttgcaggttttagactatgacatatgtccactacacaagtagtcaagtcagggacccacccacccccacacaactttgttgcacttt |
411 |
Q |
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| T |
23444963 |
aagagcatctgggttgcaggttttagactatgacatatgtccactacacaagtagtcaagtcagggacccacccacccccacacaactttgttgcacttt |
23445062 |
T |
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| Q |
412 |
gatgtacgaaaacgcgtcaataatgtgtatgaaaattgaaaggaagtagtccccagccccacactctctgctgctgaactttcaaagaagttgcacataa |
511 |
Q |
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| T |
23445063 |
gatgtacgaaaacgcgtcaataatgtgtatgaaaattgaaaggaagtagtccccagccccaca--ctctgctgctgaactttcaaagaagttgcacataa |
23445160 |
T |
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| Q |
512 |
catagtttatcaagagtaaagtagagaaatgtgttctataaagcaaaggtta |
563 |
Q |
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| T |
23445161 |
catagtttatcaagagtaaagtagagaaatgtgttctataaagcaaaggtta |
23445212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 23444659 - 23444771
Alignment:
| Q |
5 |
acaaatgcaacgcaacacttgggccccttcctctttcattcactactggagttaattattaaaagtagtgatatatatacaatc---tgggataatttta |
101 |
Q |
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| T |
23444659 |
acaaatgcaatgcaatacttgggcccctccctctttcattcactactggagctaattattaagagtagtgatatatgtacaatcatttggaataattttg |
23444758 |
T |
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| Q |
102 |
aagacaattatca |
114 |
Q |
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| T |
23444759 |
aagacaattatca |
23444771 |
T |
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