View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_5 (Length: 554)
Name: NF3071_low_5
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 373
Target Start/End: Complemental strand, 29596228 - 29595865
Alignment:
| Q |
11 |
cacagatgaaatgagtaggcaacaaactgcttg-gcatgtttgaatacaacacatgacggcgcatctcatattcatgatcaacacacttatctacttact |
109 |
Q |
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| T |
29596228 |
cacagatgaaatgagtaggcaacaaactgcttgagcatgttagaatacaacacatgacggcgcatctcatgttcatgatcaacacacttatctacttact |
29596129 |
T |
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| Q |
110 |
agtnnnnnnntcttatactacaagtctgtttggatccacggtggggctctgcagacgcgcggtttttcgaagcatcaaatactagcttcgcaattatcac |
209 |
Q |
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| T |
29596128 |
agtaaaaaaatcttatactacaagtctgtttggatccacggtggggctatgcagacacgcggtttttcgaagcaccaaatactagcttcgcaattttcac |
29596029 |
T |
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| Q |
210 |
aattagtggtttgttagtcgcgtgtttgatgtaagaaaattcgggaatcaaacacatactacaacattggtgtcattgaaaggaggtaaatctttttctt |
309 |
Q |
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| T |
29596028 |
gattagtggtatgttagacgcgtgtttgatgtaagaagattcgggaatcaaacacatactaaaacattggtgtcattgaaaggaggtaaatctttttctt |
29595929 |
T |
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| Q |
310 |
aatgtgtttcgtagttagtataaaatctcatctacttagaaccgcaaaactgtctcaaatcttg |
373 |
Q |
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| T |
29595928 |
catgtgtttcgtagttagtataaaatctcatctacttagaaccgcaaaactgtctcaaatcttg |
29595865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 442 - 535
Target Start/End: Complemental strand, 29595784 - 29595691
Alignment:
| Q |
442 |
accgaaattactcttgtttgatgaatcgttggatattaaaggtgattataccatttattcaaactttgatttatcacattaaaaaactagaaaa |
535 |
Q |
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| T |
29595784 |
accgaaattactcttgtttgatgaatcgttggatattaaaggtgatcgtatcatttattcaaactttgatttatcacattaaaaaactagaaaa |
29595691 |
T |
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