View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_6 (Length: 513)
Name: NF3071_low_6
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 7 - 513
Target Start/End: Original strand, 46669878 - 46670384
Alignment:
| Q |
7 |
cacaaccagcaaaatcaataacaccagaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaat |
106 |
Q |
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| T |
46669878 |
cacaaccagcaaaatcaataacaccagaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaat |
46669977 |
T |
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| Q |
107 |
tggataaactaaaccggttaaaaacaacgaataaatcaaataagaaacgaactgtgttctctcagcaattgatccacttgtgatccctgctgcggcaatg |
206 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46669978 |
tggataaactaaaccggttaaaaacgacgaataaatcaaataagaaacgaactgtgttctctcagcaattgatccacttgtgatccctgctgcagcaatg |
46670077 |
T |
|
| Q |
207 |
gcaaaagcccattgaaaaaggaaaaaaccgtaatcaaaagattgtgaagggaaatcagtaagaccnnnnnnntgttttcctatgaaaccgtttgaaggtg |
306 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46670078 |
gcaaaagcccattgaaagaggaaaaaaccgtaatcaaaagattgtgaagggaaatcagtaagaccaaaaaaatgttttcctatgaaaccgtttgaaggtg |
46670177 |
T |
|
| Q |
307 |
ttccaaaagctagggcaaaaccaaaaacatagnnnnnnntaccacctattgcggcatcaagaatattggttaacataatgttcatggtgtttttggcacg |
406 |
Q |
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| T |
46670178 |
ttccaaaagctagggcaaaaccaaaaacatagaaaaaaataccacctattgcggcatcaagaacattggttaacataatgttcatagtgtttttggcacg |
46670277 |
T |
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| Q |
407 |
aacagaaccggcacaaagcatagcaaaacctagttgcatggcaaaaacaagttaagctgagaatagaaggtaagtgttgtcgacagcataggaagtgtcg |
506 |
Q |
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| T |
46670278 |
aacagaaccggcacaaagcatagcaaaacctagttgcatggcaaaaacaaggtaagctgagaatagaaggtaagtgttgtcgacagcataggaagtgtcg |
46670377 |
T |
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| Q |
507 |
atgaatt |
513 |
Q |
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||||||| |
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| T |
46670378 |
atgaatt |
46670384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 513
Target Start/End: Original strand, 39641681 - 39642187
Alignment:
| Q |
7 |
cacaaccagcaaaatcaataacaccagaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaat |
106 |
Q |
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| T |
39641681 |
cacaaccagcaaaatcaataacaccggaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaat |
39641780 |
T |
|
| Q |
107 |
tggataaactaaaccggttaaaaacaacgaataaatcaaataagaaacgaactgtgttctctcagcaattgatccacttgtgatccctgctgcggcaatg |
206 |
Q |
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| T |
39641781 |
cggataaactaaacctgttagaaaagacgaataaatcaaataagaaacaaattgtgttctctcagcaattgaaccactagtgattcctgctgaagcaatt |
39641880 |
T |
|
| Q |
207 |
gcaaaagcccattgaaaaaggaaaaaaccgtaatcaaaagattgtgaagggaaatcagtaagaccnnnnnnntgttttcctatgaaaccgtttgaaggtg |
306 |
Q |
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||||||||||||||| | || ||| | || ||||||||||| || ||||| |||||| ||||||| |||||||| |||||||| || ||||||| |
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| T |
39641881 |
gcaaaagcccattgatatagaaaatatccataatcaaaagactgagaaggaaaatcactaagaccgaaaaaatgttttccaatgaaaccattagaaggtg |
39641980 |
T |
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| Q |
307 |
ttccaaaagctagggcaaaaccaaaaacatagnnnnnnntaccacctattgcggcatcaagaatattggttaacataatgttcatggtgtttttggcacg |
406 |
Q |
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| T |
39641981 |
tgccgaaagcaaaggcaaacccgaaaatatagaaaaagatgccgcctgtggctgcatcaagaacattggttaacataatattcatggtgtttttggcacg |
39642080 |
T |
|
| Q |
407 |
aacagaaccggcacaaagcatagcaaaacctagttgcatggcaaaaacaagttaagctgagaatagaaggtaagtgttgtcgacagcataggaagtgtcg |
506 |
Q |
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||| ||||| ||||||||||| |||||||| |||||||||||||||||||| |||| ||||| |||||||| |||||||| || ||||||| ||||| |
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| T |
39642081 |
aacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaagagaagagaaggtaggtgttgtcaacggcataggttgtgtca |
39642180 |
T |
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| Q |
507 |
atgaatt |
513 |
Q |
| |
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||||||| |
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| T |
39642181 |
atgaatt |
39642187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 17091335 - 17091444
Alignment:
| Q |
384 |
atgttcatggtgtttttggcacgaacagaaccggcacaaagcatagcaaaacctagttgcatggcaaaaacaagttaagctgagaatagaaggtaagtgt |
483 |
Q |
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|||||||||||||| || |||||||| ||||| ||||| ||||| |||||||| |||||||| | || ||||| ||||||||||||| ||| || |||| |
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| T |
17091335 |
atgttcatggtgttcttagcacgaactgaaccagcacagagcatggcaaaaccaagttgcatagagaagacaaggtaagctgagaataaaagataggtgt |
17091434 |
T |
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| Q |
484 |
tgtcgacagc |
493 |
Q |
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| T |
17091435 |
tgtcaacagc |
17091444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 487
Target Start/End: Original strand, 35416316 - 35416432
Alignment:
| Q |
371 |
attggttaacataatgttcatggtgtttttggcacgaacagaaccggcacaaagcatagcaaaacctagttgcatggcaaaaacaagttaagctgagaat |
470 |
Q |
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|||||| | ||| |||||||| ||||||||||| ||||| || || || || |||||||| ||||| || ||||||||||| || | ||||||||||| |
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| T |
35416316 |
attggtgagcatgatgttcatagtgtttttggctcgaacggagccagcgcagagcatagcgaaaccaagctgcatggcaaagactaaataagctgagaag |
35416415 |
T |
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| Q |
471 |
agaaggtaagtgttgtc |
487 |
Q |
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| T |
35416416 |
agaaggtaggtgttgtc |
35416432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 17091230 - 17091279
Alignment:
| Q |
279 |
tgttttcctatgaaaccgtttgaaggtgttccaaaagctagggcaaaacc |
328 |
Q |
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| T |
17091230 |
tgttttcctatgaaaccatttgaaggtgttccgaaggcaaaggcaaaacc |
17091279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 35416015 - 35416072
Alignment:
| Q |
70 |
cccaaccatcagcagaccaaaaccaatgagcaacaattggataaactaaaccggttaa |
127 |
Q |
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||||||||||||| ||||||| |||||| | ||| || |||||||| ||||||||||| |
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| T |
35416015 |
cccaaccatcagcggaccaaacccaatgcgaaacgatgggataaacaaaaccggttaa |
35416072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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