View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_low_9 (Length: 478)
Name: NF3071_low_9
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 462
Target Start/End: Original strand, 36603788 - 36604237
Alignment:
| Q |
12 |
atgaaagtaagatgaatatttagaaatccgcggccagaaatttgacttattttcatagttagcacatatgtgatcactggatcgagatcagacgatatat |
111 |
Q |
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| T |
36603788 |
atgaacgtaagatgaatatttagaaatccgcggccagaaatttgacttattctcacagtcagcacatctgtgattactggatcgagatcagacgatatag |
36603887 |
T |
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| Q |
112 |
attttgatgtagactattttattttaaaataaaaaatatcgatcttgaagtttagatcatttgatcttcatcgaacaatcacatatgtgctaattgcata |
211 |
Q |
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| T |
36603888 |
attttgatgtagactattttatttgaaa-taaaaaatattgatcttgaagtttagatcatttgatcttcatctaacgatcacatatgtgctaattgcata |
36603986 |
T |
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| Q |
212 |
aatgcatcaaattgcgggccgcagacaattctgattcgaatatttggtagtgggacaaacctgtgccatgaacatggttctaggagggattttcatgtag |
311 |
Q |
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| T |
36603987 |
aatgcgtcaaattgtgggccgcagacaattctgatttgaatatttggtagtgtgacaaacctgtgccatgaacatggttctaggagggattttcatgtag |
36604086 |
T |
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| Q |
312 |
tggcctagtttgaagtcttgcaagaaagtgatggcttgtgtcatactaatgtaaccataaaccttgaagcacatgttagctacaggatatccagggtaga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36604087 |
tggcctagtttgaagtcttgcaagaaagtgatggcttgtgtcatactaatgtaaccataaaccttgaagcacatgttagctacaggatatccagggtaga |
36604186 |
T |
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| Q |
412 |
tatatcctatgatgtactccgtgattatgttcagccctggactctataatt |
462 |
Q |
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| T |
36604187 |
tatatcctatgatgtactccgtgattatgttcagccctggactctataatt |
36604237 |
T |
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