View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3073_low_1 (Length: 516)
Name: NF3073_low_1
Description: NF3073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3073_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 8e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 13886968 - 13887236
Alignment:
| Q |
19 |
ctaagaatgactttttggttagtaccgtattttaagtaaggggtttatgaagcatatcaccaaatttaatactctctcag-cctta-caaatgattattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | | ||||||||||| |
|
|
| T |
13886968 |
ctaagaatgactttttggttagtaccgtattttaagtaaggggtttctgaagcatatcaccaaatttaatactctctcaggcctcagctaatgattattt |
13887067 |
T |
|
| Q |
117 |
gtcaacatgttgatgaattggtcatctcacacatcacatatagtcgatacgttcgaacaacaataaacatatttttccataaatggaataaattnnnnnn |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13887068 |
ctcaacatgttgatgaattggtcatctcacacatcacatgtagtcgatacgttcgaacaacaataaacatatttttccataaatggattaaatt-aaaaa |
13887166 |
T |
|
| Q |
217 |
ntgttgattctctctccacaaacatatcttagttgaactatgtgatcataaaataaaatcattagacttaa |
287 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13887167 |
ctgtt-attctctctccacaattgtatcatagttcaactatgtgatcctaaaataaaatcattagacttaa |
13887236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 283 - 467
Target Start/End: Original strand, 13888494 - 13888678
Alignment:
| Q |
283 |
cttaattgtcgaataaaaacatttttctcctccgagtcttaaaggccattcattaagtgccactcatttcgcaaataggatcgtgcaaacaacaaaacaa |
382 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13888494 |
cttaattctcgaataaaaacatttttctcctccgagtcttaaaggccattcattaagtgccactcatttcgtaaataggatcgtgcaaacaacaaaacaa |
13888593 |
T |
|
| Q |
383 |
gtggagagaaagatattagttcaatatgatatgagaagaaattcaaattttatattagagattttgatgtcatcactttgagcta |
467 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13888594 |
gtggagagaaagatagtagttcaatatgatatgagaagaaattcgaattttatattagagattttgatgtcatcactttgagcta |
13888678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 466 - 503
Target Start/End: Original strand, 13888708 - 13888745
Alignment:
| Q |
466 |
tagctcatgttggcaaatgatgctttccgatgatgtcc |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13888708 |
tagctcatgttggcaaatgatgctttccgatgaggtcc |
13888745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University