View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3073_low_3 (Length: 340)
Name: NF3073_low_3
Description: NF3073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3073_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 33878765 - 33879089
Alignment:
| Q |
1 |
ttatggattctactgtcctccttggtgacaggcaccacattgactgatatttcagcaacttctgggattgtaacgatgacactgttctcattcgatgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||| ||||||||||||||||| |
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| T |
33878765 |
ttatggattctactgtcctccttggtgacaggcaccacattgacagatatttctgcaacttccgggattgtgaccatgacaccgttctcattcgatgttc |
33878864 |
T |
|
| Q |
101 |
tctcgactctaagttgattttcctcggattgccacgtagagaggtgaccttcagggatcacgagatcctttccatcataagagagcttcaaatggtcaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33878865 |
tctcgactctaagttgattttcctcggattgccacgtagagaggtgaccttcagggatcacaagatcctttccatcataagagagcttcaaatggtcaac |
33878964 |
T |
|
| Q |
201 |
ttcgtcatcccaaattgatgatggtgtggcttcaatagaaaagttgtgtgaatcaaagaggactcccaatgcttgaatccaagtataatcccttggtctc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33878965 |
ttcgtcatcccaaattgatgatggtgtggcttcaatagaaaagttgtgtgaatcaaataggactcccaatgcttgaatccaagtataatcccttggtctc |
33879064 |
T |
|
| Q |
301 |
ccttgcggcctaaggccgataaaac |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
33879065 |
ccttgcggcctaaggccgataaaac |
33879089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 33874520 - 33874844
Alignment:
| Q |
1 |
ttatggattctactgtcctccttggtgacaggcaccacattgactgatatttcagcaacttctgggattgtaacgatgacactgttctcattcgatgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33874520 |
ttatggattctactgtcctccttggtgacaggcaccacattgactgatatttcagcaacttctgggattgtaacgatgacactgttctcattcgatgttc |
33874619 |
T |
|
| Q |
101 |
tctcgactctaagttgattttcctcggattgccacgtagagaggtgaccttcagggatcacgagatcctttccatcataagagagcttcaaatggtcaac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||| |||||||| ||||| ||||| |||| ||||||||| |
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| T |
33874620 |
tctcgactctaagttgattttcctcggattgccatgtagagaggtgacctcctgggattacgagttcctttccgtcataggagagtttcagatggtcaac |
33874719 |
T |
|
| Q |
201 |
ttcgtcatcccaaattgatgatggtgtggcttcaatagaaaagttgtgtgaatcaaagaggactcccaatgcttgaatccaagtataatcccttggtctc |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33874720 |
ttcgtcatcccaacttgatgatggtgtggcttcaatagaaaagttgtgtgaatcaaagaggactcccaatgcttgaatccaagtataatcccttggtctc |
33874819 |
T |
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| Q |
301 |
ccttgcggcctaaggccgataaaac |
325 |
Q |
| |
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| ||||||||||| |||||||||| |
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| T |
33874820 |
cgctgcggcctaagaccgataaaac |
33874844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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