View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3073_low_6 (Length: 316)
Name: NF3073_low_6
Description: NF3073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3073_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 40283582 - 40283301
Alignment:
| Q |
10 |
catcatcattcatacaatacctcaaagtccccaacaactcatcaaggcatagcaaaccaggacaagactaagtatatgaggcaattaaatacaagaccac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40283582 |
catcatcattcatacaatacctcaaagtccccaacaactcatcaaggcatagcaaaccaggacaagactaagtatatgaggcaattaaatacaagaccac |
40283483 |
T |
|
| Q |
110 |
tgctcttgtagcatcattcactcatagcaaaactaaataagaaaatcacattaattacttcgccaaaaaaggagctaacgatcctgaaacgattccctct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40283482 |
tgctcttgtagcatcattcactcatagcaaaactaaataagaaaatcacattaattacttcgccaaaaaaggagctaa-----------cgattccctct |
40283394 |
T |
|
| Q |
210 |
taatgcttcagtcctgcacttcaccatacaataggatcagcagtttcaagaaatatacaccaatgtttttggttgcagcaaatgataattctg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40283393 |
taatgcttcagtcctgcacttcaccatacaatagaatcagcagtttcaagaaatatacaccaatgtttttggttgcagcaaatgataattctg |
40283301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University