View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3073_low_8 (Length: 240)
Name: NF3073_low_8
Description: NF3073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3073_low_8 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0049 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 1501977 - 1501755
Alignment:
| Q |
18 |
agatatttccttaaaacttaccgaatccattttcaatactataatttgttatacatcatacaaaatgccctaggtcatgataagctatgctcaaatactt |
117 |
Q |
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| T |
1501977 |
agatatttccttaaaacttaccgaatccattttcaatactataatttgttatacatcatacaaaatgccctaggtcatgataagctatgctcaaatactt |
1501878 |
T |
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| Q |
118 |
caagaacgtgcaaaaatgaaaagcatgcatgttagctatacatcacaatagaacaccattcatctgttgaaaagaatgaatgtgaaactaggttgaatca |
217 |
Q |
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| T |
1501877 |
caagaacgtgcaaaaatgaaaagcatgcatgttagctatacatcacaatagaacaccattcatctgttgaaaagaatgaatgtgaaactaggttgaatca |
1501778 |
T |
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| Q |
218 |
actttaaataataacaacaaaag |
240 |
Q |
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| T |
1501777 |
actttaaataataacaacaaaag |
1501755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 1506746 - 1506686
Alignment:
| Q |
82 |
atgccctaggtcatgataagctatgctcaaatacttcaagaacgtgcaaaaatgaaaagca |
142 |
Q |
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| T |
1506746 |
atgccctaggtcatgataacctctgctcaaatacttcaagaaagtgcaagaatgaaaagca |
1506686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 73005 - 73037
Alignment:
| Q |
102 |
ctatgctcaaatacttcaagaacgtgcaaaaat |
134 |
Q |
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| T |
73005 |
ctatgctcaaatacttcaagaacgtgcaaaaat |
73037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 61111 - 61169
Alignment:
| Q |
82 |
atgccctaggtcatgataagctatgctcaaata-cttcaagaacgtgcaaaaatgaaaa |
139 |
Q |
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| T |
61111 |
atgccttaggtcatgatgacctatgctcaagtaacttcaagaacgtgcaaaaataaaaa |
61169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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