View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3073_low_9 (Length: 238)
Name: NF3073_low_9
Description: NF3073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3073_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 41367745 - 41367934
Alignment:
| Q |
18 |
cttggttacaagcaagaactaagaagagaaatggtttttgttctattgccaacttgatataaattttctcaaacttaaataacnnnnnnncttcttcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41367745 |
cttggttacaagcaagaactaagaagagaaatggtttttgttctattgccaccttgatataaattttctcaaacttaaataactttttttcttcttcaaa |
41367844 |
T |
|
| Q |
118 |
tttaatttgttacatttttccatttatcatgaagactatgttcaaaactctcgcgatagcattttcaacaatgacacttttcacggaaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41367845 |
tttaatttgttacatttttccatttatcatgaagactatgttcaaaactctcgcgatagcattttcaacaatgacacttttcacggaaat |
41367934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 44281566 - 44281780
Alignment:
| Q |
18 |
cttggttacaagcaagaactaagaagagaaatggtttttgttctattgccaacttgatataaattttctcaaacttaaa-taacnnnnnnncttcttcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||||| |||| |||| || || |
|
|
| T |
44281566 |
cttggttacaagcaagaactaagaagagaaatggtttttgttcttttgccatcttgatcaaaaaattctcaaaaataaagtaacattttt--tttttggt |
44281663 |
T |
|
| Q |
117 |
atttaatttgttacatttttccatttatcatgaagactatgttcaaaactctcgcgatagcattttcaacaatgacacttttcacggaaatcacacctct |
216 |
Q |
| |
|
| | ||| ||||| |||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||| ||||| |
|
|
| T |
44281664 |
actaaatctgttaattttttctatttattgtgcagactatgttcaaaactcttgcgatagcattttcaacaatgacgcttttcactggaatcacgcctct |
44281763 |
T |
|
| Q |
217 |
atatggttctagccttc |
233 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
44281764 |
gtatggttctagccttc |
44281780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University