View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_high_12 (Length: 486)
Name: NF3074_high_12
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 8 - 473
Target Start/End: Complemental strand, 44628173 - 44627708
Alignment:
| Q |
8 |
gcaccatcataactcgatcaattatttaattccaagaagagatcatcctacaagcaaaaatcatatcatatattatataaaccatagatgaaatagtaat |
107 |
Q |
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| T |
44628173 |
gcaccatcataactcgatcaattatttaattccaagaagagatcatcctacaagcaaaaatcatatcatatattatataaaccatagatgaaatagtaat |
44628074 |
T |
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| Q |
108 |
ttaaaatttaataggaaacagaacaatgtaaaattttttacaacttcaaagtaaacatattcaatagttagtaactcgatcatttacattttaaagtttg |
207 |
Q |
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| T |
44628073 |
ttaaaatttaataggaaacagaacaatgtacaaaattttacaacttcaaagtaaacatattcaatagttagtaactcaatcatttacattttaaagtttg |
44627974 |
T |
|
| Q |
208 |
attaataaactaaatccaacatagctacttagtaaacaacaaatacaatgacatgatgaattttcatttcctcttcaaactcatgtatgtgaagtttcag |
307 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44627973 |
attaataaactcaatccaacatagctacttagtaaacaacaaatacaatgacatgatgaattttcatttcctcttcaaactcatgtatgtgaagtttcag |
44627874 |
T |
|
| Q |
308 |
gtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatcagggcattgcacgtgtagaagaggatcctctcttctggcgttccttctctcc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
44627873 |
gtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatcagggcgttgcacgtgtagaagaggatcctctcttccggcgctccttctctcc |
44627774 |
T |
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| Q |
408 |
ttgcttgaaggacttcttgtttttctttagaagcttgaaaagatctttgataaccaagttcatctc |
473 |
Q |
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| T |
44627773 |
ttgcttgaaggacttcttgtttttctttagaagcttgaaaagatctttgataaccaagttcatctc |
44627708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 347 - 469
Target Start/End: Complemental strand, 26080955 - 26080833
Alignment:
| Q |
347 |
ttttgaatcagggcattgcacgtgtagaagaggatcctctcttctggcgttccttctctccttgcttgaaggacttcttgtttttctttagaagcttgaa |
446 |
Q |
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||||||||||| ||||| ||| ||||||||||||||| ||| | | |||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26080955 |
ttttgaatcagaacattgtacgcgtagaagaggatcctttctccctgtgttctttctctccttgcttgaaggacttcttgtttttctttagaagcttgga |
26080856 |
T |
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| Q |
447 |
aagatctttgataaccaagttca |
469 |
Q |
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||| ||||| | ||||||||||| |
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| T |
26080855 |
aaggtctttcaaaaccaagttca |
26080833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 356
Target Start/End: Original strand, 2850786 - 2850876
Alignment:
| Q |
266 |
aattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatca |
356 |
Q |
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| T |
2850786 |
aattttcattttctcttcaagtgcctgtgtgtgaagtttcagctgtagaacaagttagaaaaaacacttacaaggagtactttttgaatca |
2850876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 356
Target Start/End: Original strand, 2902818 - 2902908
Alignment:
| Q |
266 |
aattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatca |
356 |
Q |
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| T |
2902818 |
aattttcattttctcttcaagtgcctgtgtgtgaagtttcagctgtagaacaagttagaaaaaacacttacaaggagtactttttgaatca |
2902908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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