View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_high_14 (Length: 416)
Name: NF3074_high_14
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Complemental strand, 33592821 - 33592436
Alignment:
| Q |
15 |
agtataaactcacctttcttgaaattttctgtcaaaaaataaagcttgttttagaaacatttatcttgctttccatgttctggatcttgaatgaatgtaa |
114 |
Q |
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| T |
33592821 |
agtataaactcacctttcttgtaattttctgtcaaaaaataaagcttgttttagaaacatttatcttgctttccatgttctggatcttgaatgaatgtaa |
33592722 |
T |
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| Q |
115 |
accgttgtttcaaaaaatcgtaccaacacactcatatctaaaagtttattggtttcaattaaaccacttatacccccatatatgataatactcacagtaa |
214 |
Q |
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| T |
33592721 |
accgttgtttcaaaaaatcgtaccaacacactcatatctaaaagtttattggtttcaattaaaccacttatacccccatatatgataatactcacagtaa |
33592622 |
T |
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| Q |
215 |
gaaaaattaagagcacatgtttgctgattatacttcacaaatcatgaacattaaaaaataattttgcttcgtacatgtttttcacatacatagatgaaaa |
314 |
Q |
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| T |
33592621 |
gaaaaattaagagcacatgtttgctgattatacttcacaaatcatgaacattaaaaaataattttgcttcgtacatgtttttcacatacatagatgaaaa |
33592522 |
T |
|
| Q |
315 |
atgagtttttgacaccaaaaaatcagacattaacccggaatatttaaacactatgcaacttttataagataatctccttcgatccg |
400 |
Q |
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| T |
33592521 |
atgtgtttttgacaccaaaaaatccgacattaccccagaatatttaaacactttgcaacttttatactataatttccttctatccg |
33592436 |
T |
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