View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_high_16 (Length: 407)
Name: NF3074_high_16
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 14642826 - 14642468
Alignment:
| Q |
1 |
atgaaccataaaagtatgtaagaattatcatttgttctatcatttgattagtcggcaccaacatactcaaagggacaaaatacaaatccaaaaacataaa |
100 |
Q |
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| T |
14642826 |
atgaaccataaaagtatgtaagaattatcatttgttctatcatttgattagtcggcaccaacatactcaaagggacaaaatacaaatctaaaaacataaa |
14642727 |
T |
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| Q |
101 |
caatctgaaaagcatctacaattaatgtgtcaaaaccgttatgaacaagaacgaacaatgtagcacatgaatttattaccaagttaacgatgatagttgg |
200 |
Q |
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| T |
14642726 |
caatctgaaaagcatctacaattaatgtgtcaaaaccgttatgaacaagaacgaacaatgtagcacatgaatttattaccaagttaacgatgatagttgg |
14642627 |
T |
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| Q |
201 |
tagatacggttaca---taaccgataaacaatacttttattcgttatgttgcagagcataatcatctaaagcattgcaaaaacaattaatgtgtcaaacc |
297 |
Q |
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| T |
14642626 |
tggatacagttacatggtaaccggtaaacaatacttttattcgttatgttgcagagcataatcatctaaagcattacaaaaccaattaatgtgtcaaaac |
14642527 |
T |
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| Q |
298 |
ccttatgaacaataacgaaccatgtagcacatgaatttattacctagttagcgatgata |
356 |
Q |
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| T |
14642526 |
ccttaggaacgataacgaacaatgtagcacatgaatttattagcaagttaacgatgata |
14642468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 119 - 390
Target Start/End: Complemental strand, 14642544 - 14642259
Alignment:
| Q |
119 |
caattaatgtgtcaaaaccgttatgaacaagaacgaacaatgtagcacatgaatttattaccaagttaacgatgatagttggtagatacggttacat--- |
215 |
Q |
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| T |
14642544 |
caattaatgtgtcaaaacccttaggaacgataacgaacaatgtagcacatgaatttattagcaagttaacgatgatagttggtagatacggttacattgt |
14642445 |
T |
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| Q |
216 |
aaccgataaacaatacttttattcgttatgttgcagagcataatcatctaaagcattgcaaaaacaattaatgtgtcaaaccccttatgaacaataacga |
315 |
Q |
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| T |
14642444 |
aaccgataaacaatacttttattcgttatgttgcagagcataatcatctaaagcatttcaaaatcaattaatgtgtcaaatcccttatgaactataacga |
14642345 |
T |
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| Q |
316 |
accatgtagcacatgaatttattacctagttagcgat-----------gataccgttacttggtaaccaataaactatacttttat |
390 |
Q |
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| T |
14642344 |
accatgtagcacatgaatttattacctagttagcgatgaaagttggtagataccgttacttggtaaccaataaactatacttttat |
14642259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 119 - 278
Target Start/End: Complemental strand, 14642380 - 14642218
Alignment:
| Q |
119 |
caattaatgtgtcaaaaccgttatgaacaagaacgaacaatgtagcacatgaatttattaccaagttaacgatgatagttggtagatacggttac---at |
215 |
Q |
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|||||||||||||||| || |||||||| | ||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||| | |
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| T |
14642380 |
caattaatgtgtcaaatcccttatgaactataacgaaccatgtagcacatgaatttattacctagttagcgatgaaagttggtagataccgttacttggt |
14642281 |
T |
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| Q |
216 |
aaccgataaacaatacttttattcgttatgttgcagagcataatcatctaaagcattgcaaaa |
278 |
Q |
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| T |
14642280 |
aaccaataaactatacttttattcatggtgtggcagagaataacaatctaaagcattacaaaa |
14642218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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