View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_high_19 (Length: 393)
Name: NF3074_high_19
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 38225339 - 38225707
Alignment:
| Q |
18 |
gttccctcgtcatggtcaaccaaagccggtccttttgaagaagctgcacacactatagtattgacaacagagattatccaagtattaaagagaatggtct |
117 |
Q |
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| T |
38225339 |
gttccctcgtcatggtcaaccaaagccggtccttttgaagaagctgcacacactatagtattgacaacagagattatacaagtattaaagagaatggtct |
38225438 |
T |
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| Q |
118 |
ttgaagtctcttcaagtactttattggtggaaagatgtaaaatcaaggaaagaatgccaatgacgaagagactttcttgacttaagatatctgcctcttt |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38225439 |
ttgaagtctctttaagtactttattggtggaaagatgtaaaatcaaggaaagaatgccaatgacgaagagactttcttgacttaagatatctgcctcttt |
38225538 |
T |
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| Q |
218 |
tgatggaatagagtactccatcatctgcagaagtggtacgtgctgttagaactacaaaaattattgaccgaatctccaaattttctagtaagattcccta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38225539 |
tgatggaatagagtactccatcatctgcagaagtggtacgtgctgttagaactacaaaaattattgaccgaatctccaaattttctagtgagattcccta |
38225638 |
T |
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| Q |
318 |
tgcttgctatggaattattgtggatatattgcagcatcagaacacaatatttgcattccacttcatctc |
386 |
Q |
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| T |
38225639 |
tgcttgctatggaattattgtggatatattgcagcatcagaacacaatatttgcattccacttcatctc |
38225707 |
T |
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