View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_high_21 (Length: 378)
Name: NF3074_high_21
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 10163222 - 10163571
Alignment:
| Q |
15 |
gacaaatatttttggaccatccaccattcataggtgccacttacacttgaacctaagaaaaacttgaccataaaaacaataaataaaaaggacattggtt |
114 |
Q |
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| T |
10163222 |
gacaaatatttttggaccatccaccattcataggtgccatttacacttgaacctaagaaaaacttgaccataaaaacaataaataaaaaggacattggtt |
10163321 |
T |
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| Q |
115 |
tttt-aatgattttatatatataaatgttaattactagtnnnnnnnnggtacagacgttaattagttgctaagttaccaccggccattggtggtctatgt |
213 |
Q |
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|||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10163322 |
tttttaatgattttatatatataaattttaattactagtaaaaaaaaggtacagacgttaattagttgctaagttaccaccggccattggtggtctatgt |
10163421 |
T |
|
| Q |
214 |
gttggtatgagttgtaaaatatgaataatgaatcagaattgcttgattctgtaatctaagctttaccgctttctagtcatcaatttcttgtcccttcttc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
10163422 |
gttggtatgagttgtaaaatatgaataatgaatcagaattgcttgattctgtaatctaagctttaccactttctagtcatcaatttcttgtccctttttc |
10163521 |
T |
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| Q |
314 |
caaagtaaccaaccttacctttctatacacctccttttcctattataatt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10163522 |
caaagtaaccaaccttacctttctatacacctccttttcctattataatt |
10163571 |
T |
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