View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_high_25 (Length: 370)

Name: NF3074_high_25
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_high_25
NF3074_high_25
[»] chr7 (22 HSPs)
chr7 (9-114)||(5811161-5811267)
chr7 (16-113)||(13108241-13108339)
chr7 (9-117)||(46475111-46475221)
chr7 (9-114)||(23980218-23980324)
chr7 (9-110)||(21807324-21807426)
chr7 (15-113)||(42220962-42221061)
chr7 (16-90)||(15020373-15020447)
chr7 (9-113)||(45782658-45782764)
chr7 (21-112)||(36346564-36346657)
chr7 (9-115)||(34828152-34828259)
chr7 (36-114)||(42950034-42950113)
chr7 (9-113)||(28307493-28307599)
chr7 (9-114)||(31148377-31148483)
chr7 (55-115)||(384573-384635)
chr7 (9-113)||(26972201-26972307)
chr7 (9-113)||(36957516-36957620)
chr7 (9-51)||(20086690-20086732)
chr7 (9-113)||(34108513-34108619)
chr7 (9-112)||(7699882-7699987)
chr7 (9-112)||(7700080-7700185)
chr7 (9-112)||(7700278-7700383)
chr7 (9-112)||(7700476-7700581)
[»] chr6 (4 HSPs)
chr6 (9-111)||(14023021-14023124)
chr6 (9-113)||(24208531-24208636)
chr6 (31-113)||(3118045-3118129)
chr6 (10-117)||(15345654-15345762)
[»] chr2 (11 HSPs)
chr2 (9-114)||(6376236-6376342)
chr2 (31-119)||(16089930-16090019)
chr2 (9-117)||(36315648-36315758)
chr2 (20-115)||(37498859-37498956)
chr2 (9-114)||(44958200-44958307)
chr2 (9-109)||(3830900-3831001)
chr2 (9-113)||(33732656-33732761)
chr2 (9-52)||(24137153-24137196)
chr2 (12-112)||(41188859-41188961)
chr2 (9-112)||(37914236-37914340)
chr2 (9-85)||(14573082-14573159)
[»] chr3 (11 HSPs)
chr3 (9-115)||(39467098-39467205)
chr3 (9-114)||(51339781-51339887)
chr3 (14-115)||(29472901-29473003)
chr3 (9-112)||(21559648-21559753)
chr3 (9-112)||(46111943-46112048)
chr3 (15-113)||(30735494-30735594)
chr3 (28-112)||(38231398-38231484)
chr3 (9-112)||(39072278-39072377)
chr3 (9-111)||(22894767-22894870)
chr3 (9-110)||(36749493-36749596)
chr3 (9-112)||(36370337-36370442)
[»] chr8 (13 HSPs)
chr8 (9-112)||(33726098-33726203)
chr8 (9-113)||(18184640-18184745)
chr8 (15-114)||(12665438-12665539)
chr8 (9-114)||(30432426-30432532)
chr8 (9-114)||(36189303-36189408)
chr8 (9-114)||(31318892-31318999)
chr8 (18-111)||(38845023-38845118)
chr8 (9-112)||(10203751-10203856)
chr8 (216-273)||(26295843-26295900)
chr8 (216-273)||(26309100-26309157)
chr8 (216-273)||(26343161-26343218)
chr8 (9-112)||(42162685-42162790)
chr8 (9-91)||(35849474-35849556)
[»] chr1 (6 HSPs)
chr1 (9-110)||(19258674-19258776)
chr1 (10-113)||(28647441-28647545)
chr1 (12-113)||(34307136-34307239)
chr1 (9-113)||(2509111-2509217)
chr1 (33-110)||(39249864-39249943)
chr1 (9-113)||(46901733-46901839)
[»] chr4 (11 HSPs)
chr4 (9-113)||(44275793-44275898)
chr4 (9-112)||(21390955-21391059)
chr4 (27-93)||(52191220-52191286)
chr4 (9-115)||(6112717-6112824)
chr4 (9-113)||(7217852-7217958)
chr4 (9-112)||(46192446-46192551)
chr4 (15-110)||(35545005-35545102)
chr4 (22-112)||(49243915-49244006)
chr4 (9-113)||(28093094-28093200)
chr4 (9-112)||(3672361-3672466)
chr4 (9-113)||(45829256-45829361)
[»] chr5 (13 HSPs)
chr5 (10-113)||(31800646-31800750)
chr5 (27-111)||(4300544-4300629)
chr5 (9-112)||(1815619-1815720)
chr5 (9-112)||(2237363-2237468)
chr5 (9-112)||(39371014-39371119)
chr5 (31-114)||(27553372-27553455)
chr5 (9-52)||(17225404-17225447)
chr5 (9-113)||(14831631-14831737)
chr5 (9-113)||(40887940-40888046)
chr5 (22-110)||(19124474-19124563)
chr5 (10-112)||(13347216-13347320)
chr5 (9-113)||(42683686-42683792)
chr5 (15-112)||(41003850-41003948)
[»] scaffold0043 (1 HSPs)
scaffold0043 (38-114)||(87160-87237)
[»] scaffold0062 (1 HSPs)
scaffold0062 (9-112)||(6805-6910)
[»] scaffold0438 (1 HSPs)
scaffold0438 (216-273)||(13322-13379)
[»] scaffold0250 (1 HSPs)
scaffold0250 (295-348)||(4513-4568)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 5811267 - 5811161
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  5811267 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgggaggtgtataaaaaagggtgtctacctatctt 5811168  T
Q  108 tttccta 114  Q
    |||||||    
T  5811167 tttccta 5811161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 13108241 - 13108339
Alignment:
Q  16 aaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctttttcct 113  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  13108241 aaaggggtgaggatgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgaaaggtgtataaaaaagggtgtctacctatctttttcct 13108339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 46475111 - 46475221
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcc-taacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatct 106  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || |||||| |||| |||||||| ||||||||||||||| |||||||||||||||    
T  46475111 gagatgaaaaggggtgacgatgtgatgtgaaattactaaaataccccataacacatgagatgtacatgagaggtgtataaaaaagggtgtctacctatct 46475210  T
Q  107 ttttcctatat 117  Q
    |||||||||||    
T  46475211 ttttcctatat 46475221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 23980218 - 23980324
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||  |||| ||||||||| |  ||||||||||||| ||||||||||||||    
T  23980218 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatacctctaacatatgagatgtacatggaaaatgtataaaaaaggatgtctacctatctt 23980317  T
Q  108 tttccta 114  Q
    |||||||    
T  23980318 tttccta 23980324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 21807426 - 21807324
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctt 107  Q
    |||||||||| || ||| ||||| |||||||||||||||||||| ||||||||||| |||||| ||| || |||||||||||||| |||| |||||||||    
T  21807426 gagatgaaaatggatgatgatgttatgtgaaattactaaaatacccctaacacgtggggtgtatatgagaagtgtataaaaaaggttgtcaacctatctt 21807327  T
Q  108 ttt 110  Q
    |||    
T  21807326 ttt 21807324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 42221061 - 42220962
Alignment:
Q  15 aaaaggggtgaggatgtgatgtgaaattactaaaa-tactcctaacacgtgaggtgtacatgggaggtgtataaaaaaggtgtctacctatctttttcct 113  Q
    ||||||||||| ||| |||||| |||||||||||| ||| |||||||| ||  ||||||||  | ||||||| |||||||||||||||||||||||||||    
T  42221061 aaaaggggtgatgatatgatgttaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaaggtgtctacctatctttttcct 42220962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 15020373 - 15020447
Alignment:
Q  16 aaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaa 90  Q
    |||||||||| ||| |||||||||||||||||||||  |||||||| |||| |||| ||||||||||||||||||    
T  15020373 aaaggggtgaagatatgatgtgaaattactaaaatatccctaacacatgagatgtatatgggaggtgtataaaaa 15020447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 45782764 - 45782658
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgag-gtgtacatgggaggtgtataaaaaa-ggtgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| ||||||||||||||| |||||||| || | ||||||||   | |||||||||||| |||||||||||||||    
T  45782764 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataaaaagtgtataaaaaagggtgtctacctatct 45782665  T
Q  107 ttttcct 113  Q
    |||||||    
T  45782664 ttttcct 45782658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 36346657 - 36346564
Alignment:
Q  21 ggtgaggatgtgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcc 112  Q
    ||||| ||| |||||| ||||||||||||||| |||||||| ||| |||||||||  ||||||||| ||||| |||||||||||||||||||||    
T  36346657 ggtgatgatatgatgtaaaattactaaaatacccctaacacatgagggtgtacataagaggtgtatgaaaaagggtgtctacctatctttttcc 36346564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 34828152 - 34828259
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctt 107  Q
    ||||||||||| | ||| ||| |||||| ||||||||||||||| |||||||  || ||||| |||  | ||||||| ||||||| ||||||||||||||    
T  34828152 gagatgaaaagtgatgatgatatgatgtaaaattactaaaatacccctaacatatggggtgtgcataagtggtgtatgaaaaaggatgtctacctatctt 34828251  T
Q  108 tttcctat 115  Q
    ||||||||    
T  34828252 tttcctat 34828259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 42950113 - 42950034
Alignment:
Q  36 tgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctttttccta 114  Q
    ||||||||||||||||| ||| | || || ||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  42950113 tgaaattactaaaatacccctgaaacatggggtgtacatgctaggtgtataaaaaagggtgtctacctatctttttccta 42950034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 28307599 - 28307493
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgt-gaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| ||||||||||||||| | |||||  | | |||||||||  ||||||||| ||||||| |||||||||||||    
T  28307599 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccttaacatatgggggtgtacataagaggtgtatgaaaaaagatgtctacctatct 28307500  T
Q  107 ttttcct 113  Q
    |||||||    
T  28307499 ttttcct 28307493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 31148377 - 31148483
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaag-gtgtctacctatctt 107  Q
    |||||||||| |||||| ||| |||||| ||||||||||||||  |||||||  || |||||  ||  ||||||||| |||||| |||||||||||||||    
T  31148377 gagatgaaaatgggtgatgatatgatgtaaaattactaaaataagcctaacatatggggtgtgtataagaggtgtatgaaaaagagtgtctacctatctt 31148476  T
Q  108 tttccta 114  Q
    |||||||    
T  31148477 tttccta 31148483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 384573 - 384635
Alignment:
Q  55 ctaacacgtgaggtgtacatgggaggtgtata-aaaaagg-tgtctacctatctttttcctat 115  Q
    ||||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  384573 ctaacacatgagatgtacatgggaggtgtatagaaaaaggatgtctacctatctttttcctat 384635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 26972307 - 26972201
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| |||||||| |||||| ||||| || || || |||||||  || |||||| ||||||| |||||||||||||    
T  26972307 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctatct 26972208  T
Q  107 ttttcct 113  Q
    |||||||    
T  26972207 ttttcct 26972201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 36957516 - 36957620
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctt 107  Q
    |||||||||| || |||  |||| |||| ||||||||||||||| || ||||| || |||||| |||  ||||||||||||||  |||||||||||||||    
T  36957516 gagatgaaaatggatgataatgtaatgtaaaattactaaaatacccccaacacatg-ggtgtatatgaaaggtgtataaaaaattgtgtctacctatctt 36957614  T
Q  108 tttcct 113  Q
    ||||||    
T  36957615 tttcct 36957620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 20086732 - 20086690
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaata 51  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  20086732 gagataaaaaggggtgatgatgtgatgtgaaattactaaaata 20086690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 34108513 - 34108619
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgag-gtgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| |||||||| |||||| ||||| || || | ||||||||  || |||||| ||||||| ||| |||||||||    
T  34108513 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggagtgtacataagaagtgtatgaaaaagggtgtttacctatct 34108612  T
Q  107 ttttcct 113  Q
    |||||||    
T  34108613 ttttcct 34108619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 7699987 - 7699882
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    ||||| |||| || ||| ||| |||| | ||||||||||||||| | |||||| ||| |||||| ||  ||||||||| ||||||| ||| |||||||||    
T  7699987 gagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatct 7699888  T
Q  107 ttttcc 112  Q
    ||||||    
T  7699887 ttttcc 7699882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 7700185 - 7700080
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    ||||| |||| || ||| ||| |||| | ||||||||||||||| | |||||| ||| |||||| ||  ||||||||| ||||||| ||| |||||||||    
T  7700185 gagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatct 7700086  T
Q  107 ttttcc 112  Q
    ||||||    
T  7700085 ttttcc 7700080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 7700383 - 7700278
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    ||||| |||| || ||| ||| |||| | ||||||||||||||| | |||||| ||| |||||| ||  ||||||||| ||||||| ||| |||||||||    
T  7700383 gagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatct 7700284  T
Q  107 ttttcc 112  Q
    ||||||    
T  7700283 ttttcc 7700278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 7700581 - 7700476
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    ||||| |||| || ||| ||| |||| | ||||||||||||||| | |||||| ||| |||||| ||  ||||||||| ||||||| ||| |||||||||    
T  7700581 gagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatct 7700482  T
Q  107 ttttcc 112  Q
    ||||||    
T  7700481 ttttcc 7700476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 14023021 - 14023124
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctt 107  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14023021 gagatgacaaggggtgacgatgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgggaggtgtataaaaaagggtgtctacctatctt 14023120  T
Q  108 tttc 111  Q
    ||||    
T  14023121 tttc 14023124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 24208531 - 24208636
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctt 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  24208531 gagatgaaaaagggtgaggatgtgatgtgaaattactaaaatacccctaacacatgaggtgtaaatgagaggtgtataaaaaaggatgtctacctatctt 24208630  T
Q  108 tttcct 113  Q
    ||||||    
T  24208631 tttcct 24208636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 3118129 - 3118045
Alignment:
Q  31 tgatgtgaaattactaaaatactcctaacacgtgag-gtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcct 113  Q
    |||||| ||||||||||||||| ||||| || || | ||||||||  ||| ||||| ||||||| ||||||||||||||||||||    
T  3118129 tgatgtaaaattactaaaatacccctaatacatgggagtgtacataagagatgtatgaaaaaggatgtctacctatctttttcct 3118045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 15345762 - 15345654
Alignment:
Q  10 agatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatcttt 108  Q
    |||||||||  ||||| ||| |||| | |||||||| |||| | ||||| || |  |||||||||  || |||||| ||||||| ||||||||||| |||    
T  15345762 agatgaaaaaaggtgatgatatgatatcaaattactcaaatgcccctaatacatagggtgtacataagaagtgtatgaaaaaagatgtctacctattttt 15345663  T
Q  109 ttcctatat 117  Q
    |||||||||    
T  15345662 ttcctatat 15345654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 6376342 - 6376236
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctt 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  6376342 gagatgaaaatgggtgaggatgtgatgtgaaattactaaaatacctctaacacatgagatgtacatgggaggtgtataaaaaaggatgtctacctatctt 6376243  T
Q  108 tttccta 114  Q
    |||||||    
T  6376242 tttccta 6376236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 16089930 - 16090019
Alignment:
Q  31 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttcctatatga 119  Q
    |||||| ||||||||||||||| |||||||| || |||||||||  ||||||||| ||||||||||||||||||||||||||||| ||||    
T  16089930 tgatgtaaaattactaaaatacccctaacacatggggtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttcctaaatga 16090019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 36315648 - 36315758
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaagg-tgtctacctatct 106  Q
    ||||| ||||| |||||  |||||||||||||| | |||||||| ||| |||| ||||||||||||  ||||||||| |||||||| |||||||||||||    
T  36315648 gagataaaaagaggtgataatgtgatgtgaaatgattaaaatacccctgacacatgaggtgtacataagaggtgtatcaaaaaaggatgtctacctatct 36315747  T
Q  107 ttttcctatat 117  Q
    |||||||||||    
T  36315748 ttttcctatat 36315758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 37498956 - 37498859
Alignment:
Q  20 gggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcctat 115  Q
    |||||| ||| |||||| ||||||||||||||| |||||||| || || |||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  37498956 gggtgatgatatgatgtaaaattactaaaatacccctaacacatggggatgtacataagaggtgtataaaaaagggtgtctacctatctttttcctat 37498859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 44958200 - 44958307
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    ||||| |||| |||||| ||| |||||| ||||||||||||||| |||||||| ||| ||| |||||  ||||||||| ||||||| |||||||||||||    
T  44958200 gagataaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtatgaaaaaggatgtctacctatct 44958299  T
Q  107 ttttccta 114  Q
    ||||||||    
T  44958300 ttttccta 44958307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 3831001 - 3830900
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctt 107  Q
    ||||||||||| |||||  || |||||| |||||||||| |||| |||||||| || |||||||||  ||||||||| ||||| ||||||||||||||||    
T  3831001 gagatgaaaagtggtgattatctgatgtaaaattactaatatacccctaacacatggggtgtacataagaggtgtatgaaaaagggtgtctacctatctt 3830902  T
Q  108 tt 109  Q
    ||    
T  3830901 tt 3830900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 33732656 - 33732761
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctt 107  Q
    |||||||||| |||||  ||| |||||| ||||||||||||||| ||||| |  || |||||||||  ||||||||| ||||| ||||||||||||||||    
T  33732656 gagatgaaaaagggtggtgatatgatgtaaaattactaaaatacccctaatatatggggtgtacataagaggtgtatgaaaaagggtgtctacctatctt 33732755  T
Q  108 tttcct 113  Q
    ||||||    
T  33732756 tttcct 33732761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 24137196 - 24137153
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatac 52  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  24137196 gagatgaaaagggatgaggatgtgatgtgaaattactaaaatac 24137153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 41188859 - 41188961
Alignment:
Q  12 atgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtata--aaaaaggtgtctacctatctttt 109  Q
    |||||||||| ||| |||||||||| ||||||||||||||   || |||| || | |||||||| ||||||||||  |||| ||||||| ||||||||||    
T  41188859 atgaaaagggatgatgatgtgatgtaaaattactaaaatatctctgacacatgtgatgtacatgagaggtgtataacaaaagggtgtctgcctatctttt 41188958  T
Q  110 tcc 112  Q
    |||    
T  41188959 tcc 41188961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 37914340 - 37914236
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat--aaaaaaggtgtctacctatct 106  Q
    ||||| |||||||||||  |||||||||||||| | |||||||| |||   || || |||||||||  |||||||||  ||||| |||||||||||||||    
T  37914340 gagataaaaaggggtgataatgtgatgtgaaatgattaaaatac-cctggtacatggggtgtacataagaggtgtatcaaaaaagggtgtctacctatct 37914242  T
Q  107 ttttcc 112  Q
    ||||||    
T  37914241 ttttcc 37914236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 14573082 - 14573159
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgt-gaggtgtacatgggaggtgtat 85  Q
    |||||| ||| |||||| ||| |||||| ||||||||||||||| |||||||| | | |||||||||  |||||||||    
T  14573082 gagatggaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtat 14573159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 39467205 - 39467098
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctt 107  Q
    |||||||||||||||||||||||||| ||||||||||||||||  | |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  39467205 gagatgaaaaggggtgaggatgtgatatgaaattactaaaatatccataacacatgaggtgtacatgggaggtgtataaaaaagggtgtgtacctatctt 39467106  T
Q  108 tttcctat 115  Q
    ||||||||    
T  39467105 tttcctat 39467098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 51339887 - 51339781
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctt 107  Q
    |||||||||| |||||| ||| |||||| |||||||||||||||  ||||||| ||| ||||||||  ||||||||| ||||| ||||||||||||||||    
T  51339887 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacctctaacacatgatgtgtacataagaggtgtatgaaaaagggtgtctacctatctt 51339788  T
Q  108 tttccta 114  Q
    |||||||    
T  51339787 tttccta 51339781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 29472901 - 29473003
Alignment:
Q  14 gaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcc 112  Q
    |||||||| ||| ||| |||||| ||||||||||||||| |||||||| || ||||| |||  | ||||||| ||||||| |||||||||||||||||||    
T  29472901 gaaaagggatgatgatatgatgtaaaattactaaaatacccctaacacatggggtgtgcataagtggtgtatgaaaaaggatgtctacctatctttttcc 29473000  T
Q  113 tat 115  Q
    |||    
T  29473001 tat 29473003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 21559648 - 21559753
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgt-gaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatct 106  Q
    |||||||||| |||| | ||| |||||| ||||||||||||||| |||||||| | | |||||||||  ||||||||| ||||| |||||||| ||||||    
T  21559648 gagatgaaaaagggtaatgatatgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtatgaaaaatggtgtctatctatct 21559747  T
Q  107 ttttcc 112  Q
    ||||||    
T  21559748 ttttcc 21559753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 46112048 - 46111943
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtat-aaaaaaggtgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| ||||||||||||||| ||||| || || || |||| ||   |||||||| ||||| |||||||||||||||    
T  46112048 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaatacatggggatgtatataaaaggtgtatgaaaaatggtgtctacctatct 46111949  T
Q  107 ttttcc 112  Q
    ||||||    
T  46111948 ttttcc 46111943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 30735594 - 30735494
Alignment:
Q  15 aaaaggggtgaggatgtgatgtgaaattactaaaa-tactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcc 112  Q
    |||| |||||| ||| |||||| |||||||||||| ||| |||||||| ||  ||||||||  | ||||||| ||||||| |||||||||||||||||||    
T  30735594 aaaaagggtgatgatatgatgttaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaagggtgtctacctatctttttcc 30735495  T
Q  113 t 113  Q
    |    
T  30735494 t 30735494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 38231398 - 38231484
Alignment:
Q  28 atgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaagg-tgtctacctatctttttcc 112  Q
    |||| ||||||||| |||||| ||| ||| |||| || |||||||||  ||||||||| |||||||| |||||||||||||||||||    
T  38231398 atgtaatgtgaaatgactaaactacccctgacacatggggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcc 38231484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 39072377 - 39072278
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaag-gtgtctacctatctt 107  Q
    |||||||||| |||||| ||||||||||     ||||||||||| | | |||| || |||||||||   || |||||||||||| |||||||||||||||    
T  39072377 gagatgaaaatgggtgatgatgtgatgt-----tactaaaatacccttgacacatggggtgtacatcaaagatgtataaaaaagtgtgtctacctatctt 39072283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 22894767 - 22894870
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaaggtgtctacctatctt 107  Q
    |||||||||| || ||| ||| ||||||  ||||||| |||||| ||||| || ||||| |||||||  || |||||| |||| |||||||| |||||||    
T  22894767 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaagggtgtctatctatctt 22894866  T
Q  108 tttc 111  Q
    ||||    
T  22894867 tttc 22894870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 36749493 - 36749596
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaag-gtgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| |||||||| ||||||  |||| || ||||| |||||||   | |||||| |||||| ||||||||||||||    
T  36749493 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacctctaatacatgagggtgtacataaaaagtgtatgaaaaagagtgtctacctatct 36749592  T
Q  107 tttt 110  Q
    ||||    
T  36749593 tttt 36749596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 36370442 - 36370337
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaag-gtgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| |||||||| |||||| ||||| || ||||| |||| ||   | |||||| |||||| || |||||||||||    
T  36370442 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgagggtgtatataaaaagtgtatgaaaaagagtatctacctatct 36370343  T
Q  107 ttttcc 112  Q
    ||||||    
T  36370342 ttttcc 36370337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 33726098 - 33726203
Alignment:
Q  9 gagatgaaaagggg-tgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatct 106  Q
    ||||||||||| || ||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||    
T  33726098 gagatgaaaagtggatgacgatgtgatgtgaaattactaaaatacccctaacacatgaagtgtacatgggaggtgtataaaaaagggtgtctacctatct 33726197  T
Q  107 ttttcc 112  Q
    ||||||    
T  33726198 ttttcc 33726203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 18184640 - 18184745
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctt 107  Q
    ||||||||||||||||| ||| |||| | ||||||||||||||| |||||||| ||||||||||||   |||||||| ||||||| ||||||||||||||    
T  18184640 gagatgaaaaggggtgatgatatgatataaaattactaaaatacccctaacacatgaggtgtacataaaaggtgtatgaaaaaggatgtctacctatctt 18184739  T
Q  108 tttcct 113  Q
    ||||||    
T  18184740 tttcct 18184745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 12665438 - 12665539
Alignment:
Q  15 aaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcc 112  Q
    |||| |||||| ||| |||||| ||||||||||||||| |||||||| ||| ||| |||||  ||||||||  ||||||| |||||||||||||||||||    
T  12665438 aaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtacgaaaaaggatgtctacctatctttttcc 12665537  T
Q  113 ta 114  Q
    ||    
T  12665538 ta 12665539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 30432426 - 30432532
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctt 107  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||| | ||| |  || | |||||||  ||||||||| ||||| |||||||| | |||||    
T  30432426 gagatgaaaaggggtgatgatatgatgtaaaattactaaaatacccataatatatgggatgtacataagaggtgtatgaaaaagggtgtctatcaatctt 30432525  T
Q  108 tttccta 114  Q
    |||||||    
T  30432526 tttccta 30432532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 36189303 - 36189408
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctt 107  Q
    |||||||||||| |||| ||| |||| | |||||| |||||||| |||||||  || |||||||||  | ||||||| ||||||| ||||||||||||||    
T  36189303 gagatgaaaaggagtgatgatatgatataaaattattaaaatacccctaacatatg-ggtgtacataagtggtgtatgaaaaagggtgtctacctatctt 36189401  T
Q  108 tttccta 114  Q
    |||||||    
T  36189402 tttccta 36189408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 31318892 - 31318999
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgt-gaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| |||||||| |||||||||||| || | | |||||| ||  || |||||| ||||| | |||||||||||||    
T  31318892 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatactcctaatacatgggggtgtatataagaagtgtatgaaaaatgatgtctacctatct 31318991  T
Q  107 ttttccta 114  Q
    ||||||||    
T  31318992 ttttccta 31318999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 38845118 - 38845023
Alignment:
Q  18 aggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctttttc 111  Q
    |||||||| ||||||||| |||||||||||||||  |||||||| | | ||||||||||   ||||||||||||| ||||| || |||||||||||    
T  38845118 aggggtgatgatgtgatgagaaattactaaaataaccctaacacataagggtgtacatgaagggtgtataaaaaatggtgtttatctatctttttc 38845023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 10203751 - 10203856
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    |||||||||| |||||  ||| |||| | ||||||||||||||  ||||| || ||||| |||||||  ||| ||||| ||||||| |||||||||||||    
T  10203751 gagatgaaaaagggtggtgatatgatataaaattactaaaatatccctaatacatgagggtgtacataagagatgtatgaaaaagggtgtctacctatct 10203850  T
Q  107 ttttcc 112  Q
    ||||||    
T  10203851 ttttcc 10203856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 26295843 - 26295900
Alignment:
Q  216 catgactacaactatgatctttcaacaatctgtttctttattcattcatgtgttgcat 273  Q
    ||||||||||| ||||||| |||  |||||||||||| ||||||||||| ||||||||    
T  26295843 catgactacaagtatgatcattcttcaatctgtttctctattcattcatatgttgcat 26295900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 26309100 - 26309157
Alignment:
Q  216 catgactacaactatgatctttcaacaatctgtttctttattcattcatgtgttgcat 273  Q
    ||||||||||| ||||||| |||  |||||||||||| ||||||||||| ||||||||    
T  26309100 catgactacaagtatgatcattcttcaatctgtttctctattcattcatatgttgcat 26309157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 26343161 - 26343218
Alignment:
Q  216 catgactacaactatgatctttcaacaatctgtttctttattcattcatgtgttgcat 273  Q
    ||||||||||| ||||||| |||  |||||||||||| ||||||||||| ||||||||    
T  26343161 catgactacaagtatgatcattcttcaatctgtttctctattcattcatatgttgcat 26343218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 42162685 - 42162790
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaag-gtgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| |||||||| |||||| ||||| || || || |||||||   | |||||| |||||| ||||||||||||||    
T  42162685 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataaaaagtgtatgaaaaagagtgtctacctatct 42162784  T
Q  107 ttttcc 112  Q
    ||||||    
T  42162785 ttttcc 42162790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 35849556 - 35849474
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa 91  Q
    ||||||| |||||| || |||||||| |||||||| |||||  | ||| |||| |  ||| ||||||||||||||||||||||    
T  35849556 gagatgagaaggggcgatgatgtgatatgaaattattaaaacccccctgacacatatggtatacatgggaggtgtataaaaaa 35849474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 19258776 - 19258674
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatctt 107  Q
    ||||||||||||||||  ||||||||||||||||| ||||||| ||||||||| || |||||||||| ||| ||||||||||| ||||||||||||||||    
T  19258776 gagatgaaaaggggtggtgatgtgatgtgaaattattaaaatattcctaacacatggggtgtacatgagagatgtataaaaaagggtgtctacctatctt 19258677  T
Q  108 ttt 110  Q
    |||    
T  19258676 ttt 19258674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 28647441 - 28647545
Alignment:
Q  10 agatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaa-ggtgtctacctatcttt 108  Q
    |||||||||||||||  ||||||||||||||||| ||||||| ||||||||| || | |||||||| ||| ||||||||||| |||||||||||||||||    
T  28647441 agatgaaaaggggtggtgatgtgatgtgaaattattaaaatattcctaacacatgggatgtacatgagagatgtataaaaaagggtgtctacctatcttt 28647540  T
Q  109 ttcct 113  Q
    |||||    
T  28647541 ttcct 28647545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 34307239 - 34307136
Alignment:
Q  12 atgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgag-gtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttt 109  Q
    ||||||| |||||| ||| |||||| ||||||||||||||| |||||||| || | ||||||||  ||||||||| ||||||||||||||||||||||||    
T  34307239 atgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataagaggtgtatgaaaaaaggtgtctacctatctttt 34307140  T
Q  110 tcct 113  Q
    ||||    
T  34307139 tcct 34307136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 2509111 - 2509217
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtat-aaaaaaggtgtctacctatct 106  Q
    |||||||||| |||||  ||| |||||| ||||||||||||||  ||||| || ||||| |||||||  ||||||||| |||||| ||||||||||||||    
T  2509111 gagatgaaaaagggtggtgatatgatgtaaaattactaaaatatccctaatacatgagggtgtacataagaggtgtatgaaaaaaagtgtctacctatct 2509210  T
Q  107 ttttcct 113  Q
    |||||||    
T  2509211 ttttcct 2509217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 39249943 - 39249864
Alignment:
Q  33 atgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtat-aaaaaaggtgtctacctatcttttt 110  Q
    |||| ||||||||||||||| ||||| || || || |||||||  ||||||||| |||||||||||||||||||||||||    
T  39249943 atgtaaaattactaaaatacccctaatacatgggggtgtacataagaggtgtatgaaaaaaggtgtctacctatcttttt 39249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 46901839 - 46901733
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| |||||||| |||||||||| | || ||  |||||||||  ||  ||||| ||||||| |||||||||||||    
T  46901839 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatactcctgatacatggcggtgtacataagaaatgtatgaaaaaggatgtctacctatct 46901740  T
Q  107 ttttcct 113  Q
    |||||||    
T  46901739 ttttcct 46901733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 44275793 - 44275898
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctt 107  Q
    ||||| |||| |||||| ||| |||||| ||||||||||||||| |||||||| || |||||||||  ||||||||| ||||| |||||||| |||||||    
T  44275793 gagattaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatggggtgtacataagaggtgtatgaaaaagggtgtctatctatctt 44275892  T
Q  108 tttcct 113  Q
    ||||||    
T  44275893 tttcct 44275898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 21391059 - 21390955
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctt 107  Q
    |||||||||| | ||||  || |||||| ||||||||||||||| |||||||| ||||||||||||   |||||||| ||||| ||||||||||||||||    
T  21391059 gagatgaaaatgagtgaatatatgatgtaaaattactaaaatacccctaacacatgaggtgtacataaaaggtgtatgaaaaagggtgtctacctatctt 21390960  T
Q  108 tttcc 112  Q
    |||||    
T  21390959 tttcc 21390955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 52191286 - 52191220
Alignment:
Q  27 gatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg 93  Q
    ||||||||| ||||||||||||||||||||||||  || |||||||| | |||||||||||||||||    
T  52191286 gatgtgatgcgaaattactaaaatactcctaacatatggggtgtacacgagaggtgtataaaaaagg 52191220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 6112717 - 6112824
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaag-gtgtctacctatctt 107  Q
    |||||||||| || ||| ||| |||||| |||||||| |||||| ||||| || ||  ||||||||  || |||||| |||||| |||||||||||||||    
T  6112717 gagatgaaaaaggatgatgatatgatgtaaaattactcaaatacccctaatacatggagtgtacataagaagtgtatgaaaaagagtgtctacctatctt 6112816  T
Q  108 tttcctat 115  Q
    ||||||||    
T  6112817 tttcctat 6112824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 7217852 - 7217958
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtga-ggtgtacatgggaggtgtat-aaaaaaggtgtctacctatct 106  Q
    ||||| |||| |||||| ||| |||||| |||||||||||||||   |||||| ||| |||||||||  ||||||||| ||||| ||||| |||||||||    
T  7217852 gagataaaaaagggtgatgatatgatgtaaaattactaaaatacctataacacatgagggtgtacataagaggtgtatgaaaaagggtgtttacctatct 7217951  T
Q  107 ttttcct 113  Q
    |||||||    
T  7217952 ttttcct 7217958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 46192446 - 46192551
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat--aaaaaaggtgtctacctatct 106  Q
    ||||| |||||||||||  |||||||||||||| | |||||||| |||   || || |||||||||  |||||||||  ||||| |||||||||||||||    
T  46192446 gagataaaaaggggtgataatgtgatgtgaaatgattaaaatacccctggtacatggggtgtacataagaggtgtatcaaaaaagggtgtctacctatct 46192545  T
Q  107 ttttcc 112  Q
    ||||||    
T  46192546 ttttcc 46192551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 35545005 - 35545102
Alignment:
Q  15 aaaaggggtgaggatgtgatgtgaaattact-aaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatcttttt 110  Q
    ||||||||||| ||| |||||| |||||||| ||||||| |||||||| ||  ||||||||  | ||||||| ||||| |||||||||||||||||||    
T  35545005 aaaaggggtgatgatatgatgtaaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaagggtgtctacctatcttttt 35545102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 49243915 - 49244006
Alignment:
Q  22 gtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttcc 112  Q
    |||| ||| |||||| ||||||||||||||| ||||| || ||  ||||||||  ||||||||| ||||||| ||||||| |||||||||||    
T  49243915 gtgatgatatgatgtaaaattactaaaatacccctaatacatggagtgtacataagaggtgtatgaaaaaggatgtctacatatctttttcc 49244006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 28093200 - 28093094
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| ||| |||| |||||| ||||| || || || |||||||  || |||||| ||||||| |||||||||||||    
T  28093200 gagatgaaaaagggtgatgatatgatgtaaaaatactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaaggatgtctacctatct 28093101  T
Q  107 ttttcct 113  Q
    |||||||    
T  28093100 ttttcct 28093094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 3672361 - 3672466
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    |||||||||| |||||| ||| ||||||  ||||||| |||||| ||||| || ||||| |||||||  || |||||| ||||||| | |||||||||||    
T  3672361 gagatgaaaaagggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtatctacctatct 3672460  T
Q  107 ttttcc 112  Q
    ||||||    
T  3672461 ttttcc 3672466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 45829361 - 45829256
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat--aaaaaaggtgtctacctatct 106  Q
    ||||| |||||||||||  |||||||||||||| | |||||||| |||  ||  || |||||||||   ||||||||  ||||| |||||||||||||||    
T  45829361 gagataaaaaggggtgataatgtgatgtgaaatgattaaaatacccctggcatatggggtgtacat-aaaggtgtatcaaaaaagggtgtctacctatct 45829263  T
Q  107 ttttcct 113  Q
    |||||||    
T  45829262 ttttcct 45829256  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 31800646 - 31800750
Alignment:
Q  10 agatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatcttt 108  Q
    |||||||||||||||| ||| |||||| ||||||||||||||| |||||||  || ||||||||   ||||||||| ||||| ||||||| |||||||||    
T  31800646 agatgaaaaggggtgatgatatgatgtaaaattactaaaatacccctaacatatggggtgtacacaagaggtgtatgaaaaagggtgtctgcctatcttt 31800745  T
Q  109 ttcct 113  Q
    |||||    
T  31800746 ttcct 31800750  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 4300629 - 4300544
Alignment:
Q  27 gatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaaagg-tgtctacctatctttttc 111  Q
    ||||||||||||||||| |||||||  |||||||| ||||||||||||| ||| ||||||||||||| |||||| | |||||||||    
T  4300629 gatgtgatgtgaaattattaaaatatccctaacacatgaggtgtacatgagagatgtataaaaaaggatgtctatcaatctttttc 4300544  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 1815720 - 1815619
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctt 107  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||| |||||||| |  |||||||||      | ||| ||||||||||||||||||||||    
T  1815720 gagatgaaaaggggtgatgatatgatgtaaaattactaaaatacccctaacacatagggtgtacat---ttctttatgaaaaaaggtgtctacctatctt 1815624  T
Q  108 tttcc 112  Q
    |||||    
T  1815623 tttcc 1815619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 2237363 - 2237468
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| |||||||| |||||| ||||| || || || |||||||  || |||||| ||||||| |||||||||||||    
T  2237363 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacttgggggtgtacataagaagtgtatgaaaaagggtgtctacctatct 2237462  T
Q  107 ttttcc 112  Q
    ||||||    
T  2237463 ttttcc 2237468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 39371014 - 39371119
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| |||||||| |||||| ||||| || || || |||||||  || |||||| ||||||| |||||||||||||    
T  39371014 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctatct 39371113  T
Q  107 ttttcc 112  Q
    ||||||    
T  39371114 ttttcc 39371119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 27553455 - 27553372
Alignment:
Q  31 tgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttccta 114  Q
    |||||| |||||||||||||||||||||||| |  |||||||||  ||||||||| ||||| |||||||| |||| |||||||||    
T  27553455 tgatgtaaaattactaaaatactcctaacacatagggtgtacataagaggtgtatgaaaaagggtgtctatctat-tttttccta 27553372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 17225404 - 17225447
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatac 52  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||    
T  17225404 gagatgaaaagaggtgatgatgtgatgtgaaattactaaaatac 17225447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 14831631 - 14831737
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgt-gaggtgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| |||||| | |||||| ||||| |||| | |||||||||  || |||||| ||||||| ||| |||||||||    
T  14831631 gagatgaaaaagggtgatgatatgatgtaaaattattcaaatacccctaatacgtaggggtgtacataagaagtgtatgaaaaagggtgtttacctatct 14831730  T
Q  107 ttttcct 113  Q
    |||||||    
T  14831731 ttttcct 14831737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 40888046 - 40887940
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    |||||||||| |||||  ||| |||||| |||||||||||||||  |||| |  || || |||||||  ||||||||| ||||||| |||||||||||||    
T  40888046 gagatgaaaaagggtggtgatatgatgtaaaattactaaaatacctctaatagatgggggtgtacataagaggtgtatgaaaaagggtgtctacctatct 40887947  T
Q  107 ttttcct 113  Q
    |||||||    
T  40887946 ttttcct 40887940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 19124563 - 19124474
Alignment:
Q  22 gtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtataaaaa-aggtgtctacctatcttttt 110  Q
    |||| ||| |||||| |||||||||||||||   | ||||||||  |||| ||| ||||||||||||||  |||||||||||||||||||    
T  19124563 gtgatgatatgatgtaaaattactaaaatacctttgacacgtgaactgtatatgagaggtgtataaaaattggtgtctacctatcttttt 19124474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 13347216 - 13347320
Alignment:
Q  10 agatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtataaaaaagg-tgtctacctatctt 107  Q
    ||||||||| | |||| ||| ||||||  ||||||| |||||| ||||| || ||||| |||||||  || |||||| ||||||| ||||||||||||||    
T  13347216 agatgaaaaagagtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctt 13347315  T
Q  108 tttcc 112  Q
    |||||    
T  13347316 tttcc 13347320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 42683686 - 42683792
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgt-gaggtgtacatgggaggtgtataaaaaagg-tgtctacctatct 106  Q
    |||||||||| || ||  ||| |||||| ||||||||||||||| ||||| |  | | |||||||||  ||||||||| ||||||| |||||| ||||||    
T  42683686 gagatgaaaaaggatggtgatatgatgtaaaattactaaaatacccctaatatatgggggtgtacataagaggtgtatgaaaaaggatgtctatctatct 42683785  T
Q  107 ttttcct 113  Q
    |||||||    
T  42683786 ttttcct 42683792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 41003948 - 41003850
Alignment:
Q  15 aaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtata--aaaaaggtgtctacctatctttttcc 112  Q
    ||||||| ||| |||||||||| |||||||| |||||  ||| |||  || |||||||||| ||||||||||  |||||||| |||  ||||||||||||    
T  41003948 aaaagggatgatgatgtgatgtaaaattact-aaatatccctgacatatggggtgtacatgagaggtgtataacaaaaaggtttctgtctatctttttcc 41003850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 87237 - 87160
Alignment:
Q  38 aaattactaaaatactcctaacacgtgaggtgtacatgggaggtgtat-aaaaaaggtgtctacctatctttttccta 114  Q
    ||||||||||||||| |||||||| || |||||||||   |||||||| |||||||||||||||||||||||||||||    
T  87237 aaattactaaaatacccctaacacatggggtgtacataaaaggtgtatgaaaaaaggtgtctacctatctttttccta 87160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 6805 - 6910
Alignment:
Q  9 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatactcctaacacgtgagg-tgtacatgggaggtgtat-aaaaaaggtgtctacctatct 106  Q
    |||||||||| |||||| ||| |||||| |||||||| |||||  ||||| || ||||| |||||||  || |||||| ||||||||| |||||||||||    
T  6805 gagatgaaaaagggtgatgatatgatgtaaaattacttaaatatccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtatctacctatct 6904  T
Q  107 ttttcc 112  Q
    ||||||    
T  6905 ttttcc 6910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 13322 - 13379
Alignment:
Q  216 catgactacaactatgatctttcaacaatctgtttctttattcattcatgtgttgcat 273  Q
    ||||||||||| ||||||| |||  |||||||||||| ||||||||||| ||||||||    
T  13322 catgactacaagtatgatcattcttcaatctgtttctctattcattcatatgttgcat 13379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 4568 - 4513
Alignment:
Q  295 gtcttctgttcttttaacctctgctaaatcttggtttgcag--tccatctccggag 348  Q
    ||||| || |||||||| || ||||||||||||||||||||  |||||||||||||    
T  4568 gtcttatgctcttttaagctttgctaaatcttggtttgcagtctccatctccggag 4513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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