View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_high_3 (Length: 654)
Name: NF3074_high_3
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 185 - 644
Target Start/End: Original strand, 54880797 - 54881247
Alignment:
| Q |
185 |
ccaagagatgaagatccaatgtgatgtgtgtgagaaagctgaggctactatgttctgtccttcagatgaagctgctctttgccatggatgtgatcatacc |
284 |
Q |
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| T |
54880797 |
ccaagagatgaagatccaatgtgatgtgtgtgagaaagctgaggctactatgttctgtccttcagatgaagctgctctttgccatggatgtgatcatacc |
54880896 |
T |
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| Q |
285 |
atccaccgtgccaacaagctcgcaaccaaacacactcgtttttctcttgttcacctcaactccaaagactaccctctttgtgatatctgtcaagtatgaa |
384 |
Q |
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| T |
54880897 |
atccaccgtgccaacaagctcgcaaccaaacacactcgtttttctcttgttcacctcaactccaaagactaccctctttgtgatatctgtcaagtatgaa |
54880996 |
T |
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| Q |
385 |
tacaccgtcgcatctggatcttttaatattttaaagaatctcatgagtcagatgtcactaatgcaaccacaactctaaccacgttttaaaatggtcttta |
484 |
Q |
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| T |
54880997 |
tacaccgtcgcatctggatcttttaatattttaaagaatctcatgagtcagatgtgactaattcaaccacaactctaaccacgttttaaaatggtcttta |
54881096 |
T |
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| Q |
485 |
attaattaataataaataatatcgtgcgnnnnnnngttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtg |
584 |
Q |
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| T |
54881097 |
attaat--------aataatatcttgcg-ttttttgttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtg |
54881187 |
T |
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| Q |
585 |
accttccaatccatggagcaaatgaacatacacagaaacataacaggtttcttctctctg |
644 |
Q |
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| T |
54881188 |
accttccaatccatggagcaaatcaacatacacagaaacataacaggtttcttctctctg |
54881247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 54880585 - 54880664
Alignment:
| Q |
18 |
cctagtggagctgatgtttctggaccctaatgccaattcgcccataattcttttgtcccctttcttttactttcccatct |
97 |
Q |
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| T |
54880585 |
cctagtggagctgatgtttctggaccctaatgccaattcgcccataattcttttgtcccctttcttttactttcccatct |
54880664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 599
Target Start/End: Original strand, 26846544 - 26846622
Alignment:
| Q |
521 |
ttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatg |
599 |
Q |
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| T |
26846544 |
ttgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatg |
26846622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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