View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_high_33 (Length: 327)
Name: NF3074_high_33
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 27945524 - 27945821
Alignment:
| Q |
1 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27945524 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacctggggagagaacggatactacaagatttgcaggggacgaaatatctgtggagtggact |
27945623 |
T |
|
| Q |
101 |
caatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaaccttcctttcaagacttgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
27945624 |
caatggtttctactgtggctgctgctcacactaatactcagtgacagtagtatgttttccatctc--atacttgaaccaaccttcatttcaagacttgtt |
27945721 |
T |
|
| Q |
201 |
ggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtaggagac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||| |
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| T |
27945722 |
ggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacataatgtctcacttgttgagctcacactattataggagac |
27945821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 27437032 - 27437360
Alignment:
| Q |
1 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27437032 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacctggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggact |
27437131 |
T |
|
| Q |
101 |
caatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaacc-----ttcctttcaagac |
195 |
Q |
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| T |
27437132 |
caatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgatttctatctc--atacatgtaccaaccttcatttcatttcaagac |
27437229 |
T |
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| Q |
196 |
ttgttggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtag |
295 |
Q |
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|||||| ||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
27437230 |
ttgttgaatatgatcatccaatggttggccttcctattccttgcaccgaagatgtcttccagcacataatgtctcgcttgtaaagctcacactattgttg |
27437329 |
T |
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| Q |
296 |
gagacccacctagtttactgttagtagatcc |
326 |
Q |
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||||| | ||||||||||||||||||||| |
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| T |
27437330 |
gagactggcatagtttactgttagtagatcc |
27437360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 27549197 - 27549020
Alignment:
| Q |
1 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggact |
100 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||| ||||| |||||||| || |||||||| |||||||| || ||||||||||||||||||||||||| |
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| T |
27549197 |
gagaagccgtattggattgttaaaagctcctggggcgagacgtggggagaaaatggatactataagatttgtaggggacgaaatatctgtggagtggact |
27549098 |
T |
|
| Q |
101 |
caatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaa |
180 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||| ||||||||||||| |
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| T |
27549097 |
caatggtttctactgtggctgctgctcaaactacaactcactgactgtagtatgttttccatctc--atacttgaaccaa |
27549020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 214 - 326
Target Start/End: Complemental strand, 27549022 - 27548910
Alignment:
| Q |
214 |
caatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtaggagacccacctagtttac |
313 |
Q |
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||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
27549022 |
caatggttggcctcactatttcttgcaccgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtaggagaccgacatagtttac |
27548923 |
T |
|
| Q |
314 |
tgttagtagatcc |
326 |
Q |
| |
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||||||||||||| |
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| T |
27548922 |
tgttagtagatcc |
27548910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 26766360 - 26766496
Alignment:
| Q |
1 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggact |
100 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||||||||| || |||||||| || || ||||| |||||||||||||| |||||||||| |
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| T |
26766360 |
gagaagccatattggataattaaaaactcatggggtgagacttggggagaaaatggatactataaaatatgcaggggacgaaatatctgcggagtggact |
26766459 |
T |
|
| Q |
101 |
caatggtttctactgtggctgctgctcacactactac |
137 |
Q |
| |
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| |||||||||||||||||||| | ||| |||||||| |
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| T |
26766460 |
ctatggtttctactgtggctgccgttcatactactac |
26766496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 27503968 - 27504001
Alignment:
| Q |
168 |
atacttgaaccaaccttcctttcaagacttgttg |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
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| T |
27503968 |
atacttgaaccaaccttcatttcaagacttgttg |
27504001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 27504021 - 27504097
Alignment:
| Q |
199 |
ttggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttg |
275 |
Q |
| |
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||||||||||| || |||||| |||||| | |||||| || ||||||||||||||| |||||||| ||| ||||| |
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| T |
27504021 |
ttggatatgatcatccaatgggtggcctcaccattccttgcaccgaagatgtcttccaacacataacttcttgcttg |
27504097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 7400539 - 7400625
Alignment:
| Q |
42 |
ttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggactcaatggtttctactgtggctgctgctca |
128 |
Q |
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|||||| ||| | ||||| |||||||| |||||||| |||||| | ||||||||||| || ||||| || ||||| ||||| ||||| |
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| T |
7400539 |
ttggggtgaggaaggatattacaagatctgcagaggccgaaatgtatgtggagtggattccatggtctccactgttgctgcagctca |
7400625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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