View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_high_39 (Length: 318)
Name: NF3074_high_39
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 1182665 - 1182906
Alignment:
| Q |
11 |
catcatcagaagtacattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatgaat |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182665 |
catcatcagaagtacattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatgaat |
1182764 |
T |
|
| Q |
111 |
gtagcaatgaagagaaagtagaagctacataattcaaaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcggtaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1182765 |
gtagcaatgaagagaaagtagaagctacataattcaaaccgatagttggatctctgagatgcctatgcaataacagacctgatatatgctttgcggtaag |
1182864 |
T |
|
| Q |
211 |
tatcagcagtagatacatgaatgatcctagaaaatctcatct |
252 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
1182865 |
tatcatcagtagatacatgaatgatcctaggaaatctcatct |
1182906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 1183160 - 1183209
Alignment:
| Q |
253 |
tttgcagcttgtcaagcaatttggctggatacagtgatgaaagagctaaa |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1183160 |
tttgcagcttgtcaagcaatttggctggatacagtgatgaaagagctaaa |
1183209 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 26076111 - 26076352
Alignment:
| Q |
11 |
catcatcagaagtacattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatgaat |
110 |
Q |
| |
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||||| |||||||||||||| |||||||| |||| ||| | |||| |||||||| | || ||||||| ||||||||||||||||| || ||||||| |
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| T |
26076111 |
catcaacagaagtacattggagaactgcttgaaagatttcaaatgattgattgcaataatgcatcaaatccatctgaaacaaatgctaaactagatgaat |
26076210 |
T |
|
| Q |
111 |
gtagcaatgaagagaaagtagaagctacataattcaaaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcggtaag |
210 |
Q |
| |
|
|||| |||||||| || | || |||| ||||||||| |||||| ||||| || |||||| ||||||| |||||||| |||||||||||||| ||||| |
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|
| T |
26076211 |
gtagtaatgaagaaaaggcggagtctactgaattcaaacagatagtgggatcactaagatacttatgcaacaacagaccagatatatgctttgcagtaag |
26076310 |
T |
|
| Q |
211 |
tatcagcagtagatacatgaatgatcctagaaaatctcatct |
252 |
Q |
| |
|
||| | |||||||| |||||||||||| || || |||||||| |
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|
| T |
26076311 |
tataatcagtagattcatgaatgatccaaggaagtctcatct |
26076352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 4958828 - 4958602
Alignment:
| Q |
11 |
catcatcagaagtacattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatgaat |
110 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||| ||| | |||| |||||||| | || ||||||| ||||||||||||||||| || ||||||| |
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| T |
4958828 |
catcagcagaagtacattggagaactgcttgaaatatttcaaatgattgattgcaataatgcatcaaatccatctgaaacaaatgctaaactagatgaat |
4958729 |
T |
|
| Q |
111 |
gtagcaatgaagagaaagtagaagctacataattcaaaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcggtaag |
210 |
Q |
| |
|
| || |||||||| || || || |||| ||||||||| |||||| ||||| |||||||| ||||||| |||||||| ||||||||||||| ||||| |
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|
| T |
4958728 |
gcagtaatgaagaaaaggtggagtctactaaattcaaacagatagtgggatcattgagatacttatgcaacaacagaccatatatatgctttgcagtaag |
4958629 |
T |
|
| Q |
211 |
tatcagcagtagatacatgaatgatcc |
237 |
Q |
| |
|
||||| |||||||| |||||||||||| |
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|
| T |
4958628 |
tatcatcagtagattcatgaatgatcc |
4958602 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 12370527 - 12370767
Alignment:
| Q |
12 |
atcatcagaagtacattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatgaatg |
111 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||| ||| | |||| |||||||| | || ||||||| ||||||||||||||||| || |||||||| |
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|
| T |
12370527 |
atcagcagaagtacattggataactgcttgaaagatttcaaatgattgattgcaataatgcatcaaatccatctgaaacaaatgctaaactagatgaatg |
12370626 |
T |
|
| Q |
112 |
tagcaatgaagagaaagtagaagctacataattcaaaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcggtaagt |
211 |
Q |
| |
|
|| |||||||| || || || |||| ||||||||| ||||| ||||| ||||||||| ||||||| | |||||| |||||||||||||| |||||| |
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|
| T |
12370627 |
cagtaatgaagaaaaggtggagtctactgaattcaaacatatagtgggatcactgagatacttatgcaacagcagaccagatatatgctttgcagtaagt |
12370726 |
T |
|
| Q |
212 |
atcagcagtagatacatgaatgatcctagaaaatctcatct |
252 |
Q |
| |
|
|||| |||||||| |||||||||||| || || |||||||| |
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|
| T |
12370727 |
atcatcagtagatgcatgaatgatccaaggaagtctcatct |
12370767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 252
Target Start/End: Original strand, 5242957 - 5243161
Alignment:
| Q |
47 |
tttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatgaatgtagcaatgaagagaaagtagaagctacataattca |
146 |
Q |
| |
|
||||||||| |||||| ||||||| || |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |||| |||||| |
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| T |
5242957 |
tttgatatggtagattgtaacactgcaactaatccttctgaaacaaatgctaagctagatgaatgcatcaatgaagagaaagtagaacctactgaattca |
5243056 |
T |
|
| Q |
147 |
aaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcggtaagtatcagcagtagatacatgaatgatcctagaaaatc |
246 |
Q |
| |
|
| |||| | ||| | |||||||| |||| |||| ||||| |||||||||||||| |||||||||| || |||| |||||||||||| || || || |
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| T |
5243057 |
tgcagataatagga-ccatgagatacttatgtaatagtagaccagatatatgctttgcagtaagtatcattagaagattcatgaatgatccaaggaagtc |
5243155 |
T |
|
| Q |
247 |
tcatct |
252 |
Q |
| |
|
|||||| |
|
|
| T |
5243156 |
tcatct |
5243161 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 32368862 - 32368621
Alignment:
| Q |
11 |
catcatcagaagtacattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatgaat |
110 |
Q |
| |
|
||||| || ||||||||||| |||||||| |||| |||| | |||| || ||||||| || | ||||| |||||||||||||||||| ||||||| | |
|
|
| T |
32368862 |
catcaacaaaagtacattggggaactgcttgaaaggtttcaaatgattgactgcaacattgcatcgaatccatctgaaacaaatgctaagttggatgagt |
32368763 |
T |
|
| Q |
111 |
gtagcaatgaagagaaagtagaagctacataattcaaaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcggtaag |
210 |
Q |
| |
|
||| |||||||| | |||| || |||| ||||||||| |||||| ||||| ||| ||| ||||||| |||| ||| ||||||| |||||| ||||| |
|
|
| T |
32368762 |
gtactaatgaagaaagagtaaaacctactgaattcaaacagatagtgggatcattgatgtacttatgcaacaacaaaccagatatatcctttgcagtaag |
32368663 |
T |
|
| Q |
211 |
tatcagcagtagatacatgaatgatcctagaaaatctcatct |
252 |
Q |
| |
|
||||| | |||| | |||||||||||| || ||||||||||| |
|
|
| T |
32368662 |
tatcatcggtaggttcatgaatgatccaaggaaatctcatct |
32368621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 9636620 - 9636687
Alignment:
| Q |
165 |
tgagatacctatgcaataacagacctgatatatgctttgcggtaagtatcagcagtagatacatgaat |
232 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
9636620 |
tgagatacttatgcaataccagacctgacatatgctttgaaataagcttcaccagtagatacatgaat |
9636687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 33717140 - 33717078
Alignment:
| Q |
200 |
tttgcggtaagtatcagcagtagatacatgaatgatcctagaaaatctcatctt-ttgcagct |
261 |
Q |
| |
|
||||| |||||||||| || |||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
33717140 |
tttgcagtaagtatcatcaatagatacatgaatgatccgtgaaaatctaatcttattgcagct |
33717078 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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