View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_high_40 (Length: 317)

Name: NF3074_high_40
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_high_40
NF3074_high_40
[»] chr4 (1 HSPs)
chr4 (18-311)||(49915955-49916242)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 49915955 - 49916242
Alignment:
Q  18 acaaactgttactatgcaaattctaatttgtttatttgcagcctaattactaactagaccccataattgtgagtcaaatggttattatgacgtttaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49915955 acaaactgttactatgcaaattctaatttgtttatttgcagcctaattactaactagaccccataattgtgagtcaaatggttattatgacgtttaatca 49916054  T
Q  118 cacctttcattgtcaaacaagcacacctcacctgttacatatatcttatggtgattggtggccaaagcaaagatgagaatgacaccacattagaaatata 217  Q
    |  ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49916055 c--ctttcattgtcaaacaagcccacctcacctgttacatttatcttatggtgattggtggccaaagcaaagatgagaatgacaccacattagaaatata 49916152  T
Q  218 cttttacaataaagaaagaattgtgcttaaactttgtatggagagagtatatagtaggattagtagcatacttactatttaccattcatctcac 311  Q
    ||||||||||    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49916153 cttttacaat----aaagaattgtgcttaaactttgtatgtagagagtatatagtaggattagtagcatacttactatttaccattcatttcac 49916242  T

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