View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_high_43 (Length: 303)
Name: NF3074_high_43
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 27945851 - 27946137
Alignment:
| Q |
1 |
ttttgaacatgagacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaaggcattttttgttt |
100 |
Q |
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| T |
27945851 |
ttttgaacttgagatatcttatcaaattttaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaaggcattttttgttt |
27945950 |
T |
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| Q |
101 |
gatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttttgttactatgttagaatgttcactcttccttgcagtcagaccttagt |
200 |
Q |
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| T |
27945951 |
gatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttttgtttctatgttagaatgttcactcttccttgcagtcagaccttagt |
27946050 |
T |
|
| Q |
201 |
attttgtgtgaattattatttgaatacatataagaaatttaagatttg--gtgtcaaagtcccaatcacacacgagatagcttccct |
285 |
Q |
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| T |
27946051 |
attttgtgtgaattattatttgaatacagataagaaatttaagatttggagtgttaaagtcccaatcatacacgagatagcttccct |
27946137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 27548908 - 27548714
Alignment:
| Q |
1 |
ttttgaacatgagacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaaggcattttttgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
27548908 |
ttttgaacatgagacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaatgctttttttgttt |
27548809 |
T |
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| Q |
101 |
gatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttttgttactatgttagaatgttcactcttccttgcagtcagacc |
195 |
Q |
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| T |
27548808 |
gatgaataataacaatgaattatacttttcaagcagctcctatgtttactttttgtttctatgttagaatgttgattcttccttgcagttagacc |
27548714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 27437362 - 27437557
Alignment:
| Q |
1 |
ttttgaacatgagacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaaggcattttttgttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| | |||||||| |||| |
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| T |
27437362 |
ttttgaacatgagacatcttatcaaattgtaaagaccctacagagataggaaatgtaattatcataaaaatgatagattttgactatgcatttttcgttt |
27437461 |
T |
|
| Q |
101 |
gatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttttgttactatgttagaatgttcactcttccttgcagtcagacctt |
197 |
Q |
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| T |
27437462 |
gatgaataatgacaatgaattcgacttttcaagtagctcctatgttttttgtttgtt-ttatgttaaaattttcactcttccttgcagtcagacctt |
27437557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 27548631 - 27548583
Alignment:
| Q |
193 |
accttagtattttgtgtgaattattatttgaatacatataagaaattta |
241 |
Q |
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| T |
27548631 |
accttagtattttgtgtgaattattattttaatgcagataagaaattta |
27548583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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