View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_high_48 (Length: 295)

Name: NF3074_high_48
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_high_48
NF3074_high_48
[»] chr8 (1 HSPs)
chr8 (1-295)||(29273991-29274283)
[»] chr1 (3 HSPs)
chr1 (1-295)||(268565-268881)
chr1 (158-285)||(28164580-28164707)
chr1 (158-285)||(28127898-28128019)
[»] chr6 (33 HSPs)
chr6 (80-295)||(26646222-26646445)
chr6 (80-295)||(26752190-26752413)
chr6 (159-295)||(26861446-26861582)
chr6 (156-295)||(27718600-27718739)
chr6 (156-295)||(28786105-28786244)
chr6 (156-295)||(28792226-28792365)
chr6 (138-295)||(26622785-26622942)
chr6 (138-295)||(26728763-26728920)
chr6 (156-295)||(27229059-27229198)
chr6 (156-295)||(27611223-27611362)
chr6 (156-295)||(27698715-27698854)
chr6 (156-295)||(27725066-27725205)
chr6 (156-295)||(28780966-28781105)
chr6 (161-295)||(27593241-27593375)
chr6 (161-255)||(27677875-27677969)
chr6 (156-201)||(27338380-27338425)
chr6 (156-201)||(27399120-27399165)
chr6 (163-295)||(27678780-27678912)
chr6 (156-295)||(31284115-31284254)
chr6 (159-295)||(26802272-26802408)
chr6 (156-199)||(26655816-26655859)
chr6 (156-199)||(26761787-26761830)
chr6 (156-195)||(27605032-27605071)
chr6 (158-188)||(26055788-26055818)
chr6 (163-201)||(27706717-27706755)
chr6 (158-187)||(25481604-25481633)
chr6 (158-187)||(25538402-25538431)
chr6 (158-187)||(25579581-25579610)
chr6 (158-187)||(26048707-26048736)
chr6 (158-187)||(26069876-26069905)
chr6 (158-187)||(26075758-26075787)
chr6 (158-187)||(26142727-26142756)
chr6 (156-192)||(26823673-26823709)
[»] chr4 (5 HSPs)
chr4 (155-295)||(18724293-18724433)
chr4 (156-295)||(18699608-18699747)
chr4 (156-295)||(18679775-18679914)
chr4 (156-295)||(18655685-18655824)
chr4 (156-295)||(18731712-18731851)
[»] scaffold1254 (1 HSPs)
scaffold1254 (156-295)||(138-277)
[»] scaffold0419 (1 HSPs)
scaffold0419 (156-295)||(7352-7491)
[»] scaffold0277 (2 HSPs)
scaffold0277 (156-295)||(4892-5031)
scaffold0277 (156-295)||(13853-13992)
[»] scaffold0349 (3 HSPs)
scaffold0349 (156-295)||(3643-3782)
scaffold0349 (156-255)||(8062-8161)
scaffold0349 (156-295)||(14576-14715)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 29274283 - 29273991
Alignment:
Q  1 tatattttaatagactcgacacaagtcacacttaggagaaaaggtaacgaagttcacacttgcaatttttatatatactgaggccaacaataacatacac 100  Q
    |||||||||| |||||  |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29274283 tatattttaacagacttcacacaagtcacacggaggagaaaaggtaacgaagttcacacttgcaatttatatatatactgaggccaacaataacatacac 29274184  T
Q  101 ctactcatccatattctttattctcaaacaatcctcctatcttccattaatttcttctcaattctcatggctatgcaatcaccttcctcttcctcttcaa 200  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29274183 ctactcatccatattctatattctcaaacaatcct-ctatcttccattaatttcttctcaa-tctcatggctatgcaatcaccttcctcttcctcttcaa 29274086  T
Q  201 tctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcgtgatggttttattgatcatctctacaaggctcttactgac 295  Q
    |||||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||||  |||||||||||| |||||||||||    
T  29274085 tctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggttttattggccatctctacaagactcttactgac 29273991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 268881 - 268565
Alignment:
Q  1 tatattttaatagactcgacacaagtcacacttaggagaaaaggtaacgaagttcaca-cttgcaatttttatatatact-------------------- 79  Q
    |||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||| |  ||||||||||||||||||||                        
T  268881 tatattttaacagactcgacacaagtcacacggaggcgaaaaggtaacgaagttcatagattgcaatttttatatatactgttacatagttttatattac 268782  T
Q  80 -gaggccaacaataacatacacctactcatccatattctttattctcaaacaatcctcctatcttccattaatttcttctcaattctcatggctatgcaa 178  Q
     |||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  268781 agaggccaacaatagtatacacctactcatccatattctatattctcaaacaatcctcctatcttccattaatttcttctcagttctcatggctatgcaa 268682  T
Q  179 tcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcgtgatggttttattgatcatctct 278  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| | |||| ||||||||||||| ||||||||||  |||||||    
T  268681 tcaccttcctcttcctcttcaatctcatatggatttgcctaccaggtcttcctcaacttcagaggcggtgacactcgtgagggttttattggccatctct 268582  T
Q  279 acaaggctcttactgac 295  Q
    |||||||||||||||||    
T  268581 acaaggctcttactgac 268565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 285
Target Start/End: Complemental strand, 28164707 - 28164580
Alignment:
Q  158 tcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcgtg 257  Q
    ||||||||||||||||| | ||| | |||||||||||||||||| || ||||||| ||| ||||| || |||||||  ||||  ||||||||||||||||    
T  28164707 tcaattctcatggctatacgatcgcattcctcttcctcttcaatttcctatggattcacataccaagtgttcctcagttttaggggcagtgacactcgtg 28164608  T
Q  258 atggttttattgatcatctctacaaggc 285  Q
    | ||||| | ||  |||||||| |||||    
T  28164607 acggtttcactggccatctctataaggc 28164580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 285
Target Start/End: Complemental strand, 28128019 - 28127898
Alignment:
Q  158 tcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcgtg 257  Q
    ||||||||||||||||||||||||| |||||||||      ||| || ||||||| ||| ||||| || ||||||| ||| |  ||||||||||||||||    
T  28128019 tcaattctcatggctatgcaatcacattcctcttc------aatttcctatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtg 28127926  T
Q  258 atggttttattgatcatctctacaaggc 285  Q
    | ||||| | ||  ||||||||||||||    
T  28127925 acggtttcactggccatctctacaaggc 28127898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 80 - 295
Target Start/End: Original strand, 26646222 - 26646445
Alignment:
Q  80 gaggccaacaataacatacacctactcatccatattctttattctcaaacaat--cctcctatcttccattaatttcttctcaattctcatggctatgca 177  Q
    |||||||||||||||||||||| ||||||||||||||| |||||| |||||||  |||||||||||||||||||||| | ||||||||||||||||||||    
T  26646222 gaggccaacaataacatacaccaactcatccatattctgtattcttaaacaatatcctcctatcttccattaatttcctttcaattctcatggctatgca 26646321  T
Q  178 atcacc------ttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcgtgatggttttattgat 271  Q
    ||| ||      |||||||||||||| ||| || || |||| |||||||||||||||||||||||| |  ||||||||||||||||| ||||||| ||      
T  26646322 atctccttcctattcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactgga 26646421  T
Q  272 catctctacaaggctcttactgac 295  Q
    ||||||||||||||||||||||||    
T  26646422 catctctacaaggctcttactgac 26646445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 80 - 295
Target Start/End: Original strand, 26752190 - 26752413
Alignment:
Q  80 gaggccaacaataacatacacctactcatccatattctttattctcaaacaat--cctcctatcttccattaatttcttctcaattctcatggctatgca 177  Q
    |||||||||||||||||||||| ||||||||||||||| |||||| |||||||  |||||||||||||||||||||| | ||||||||||||||||||||    
T  26752190 gaggccaacaataacatacaccaactcatccatattctgtattcttaaacaatatcctcctatcttccattaatttcctttcaattctcatggctatgca 26752289  T
Q  178 atcacc------ttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcgtgatggttttattgat 271  Q
    ||| ||      |||||||||||||| ||| || || |||| |||||||||||||||||||||||| |  ||||||||||||||||| ||||||| ||      
T  26752290 atctccttcctattcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactgga 26752389  T
Q  272 catctctacaaggctcttactgac 295  Q
    ||||||||||||||||||||||||    
T  26752390 catctctacaaggctcttactgac 26752413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 159 - 295
Target Start/End: Original strand, 26861446 - 26861582
Alignment:
Q  159 caattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcgtga 258  Q
    ||||||| ||||||||||||||||||| |||||||||||| || || ||||||| ||  |||||||| |||||||  || | ||| |||||||||||  |    
T  26861446 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggta 26861545  T
Q  259 tggttttattgatcatctctacaaggctcttactgac 295  Q
    ||||||||  | | |||||||||||||||||||||||    
T  26861546 tggttttaccggtaatctctacaaggctcttactgac 26861582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 27718739 - 27718600
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| ||||  |||||| ||| ||||| || |||||||  ||||  |||| |||||||||    
T  27718739 tctcaattctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 27718640  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      |  ||||||  |   |||||||||||||||||||||||    
T  27718639 gcacagttttaccggaaatctctacaaggctcttactgac 27718600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 28786105 - 28786244
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||||||| |||||||| |||||||||||||| ||||||||| | || ||||||| ||| ||||| || |||||||  ||||  |||| |||||||||    
T  28786105 tctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 28786204  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  28786205 ccacggttttaccggaaatctctacaaggctcttactgac 28786244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 28792226 - 28792365
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||||||| |||||||| |||||||||||||| ||||||||| | || ||||||| ||| ||||| || |||||||  ||||  |||| |||||||||    
T  28792226 tctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 28792325  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  28792326 ccacggttttaccggaaatctctacaaggctcttactgac 28792365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 295
Target Start/End: Original strand, 26622785 - 26622942
Alignment:
Q  138 tatcttccattaatttcttctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactt 237  Q
    ||||||| | |||||| || |||||| ||||||||||||||||||| ||||||||||||||||| || |||  || ||  ||||| || ||||| |  ||    
T  26622785 tatcttcaactaatttgttatcaattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagttt 26622884  T
Q  238 taaaggcagtgacactcgtgatggttttattgatcatctctacaaggctcttactgac 295  Q
     | |||||||||||||||  | ||||| | ||   |||||||||||||||||||||||    
T  26622885 cagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgac 26622942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 295
Target Start/End: Original strand, 26728763 - 26728920
Alignment:
Q  138 tatcttccattaatttcttctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactt 237  Q
    ||||||| | |||||| || |||||| ||||||||||||||||||| ||||||||||||||||| || |||  || ||  ||||| || ||||| |  ||    
T  26728763 tatcttcaactaatttgttatcaattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagttt 26728862  T
Q  238 taaaggcagtgacactcgtgatggttttattgatcatctctacaaggctcttactgac 295  Q
     | |||||||||||||||  | ||||| | ||   |||||||||||||||||||||||    
T  26728863 cagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgac 26728920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 27229059 - 27229198
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||| |||||||||||| |||||||||||||||||||||||| | || | ||||| ||| ||||| || ||||| |  ||||  |||| |||||||||    
T  27229059 tctcaagtctcatggctatacaatcaccttcctcttcctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcg 27229158  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  27229159 gcacggttttaccggcaatctctacaaggctcttactgac 27229198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 27611362 - 27611223
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||||| ||||||||||||||| | |||||||||| |||||| | || ||||||| ||| ||||| || |||||||  ||||  |||| |||||||||    
T  27611362 tctcaattttcatggctatgcaattagcttcctcttcttcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 27611263  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  27611262 ccacggttttaccggaaatctctacaaggctcttactgac 27611223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 27698854 - 27698715
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||| | || ||||||| ||| ||||| || ||| |||  ||||  |||| |||||||||    
T  27698854 tctcaattctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcg 27698755  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  27698754 gcacggttttaccggaaatctctacaaggctcttactgac 27698715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 27725205 - 27725066
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||||| |||||||||| |||||||||||||| ||||||||| | || ||||||| ||| ||||| || ||||| |  ||||  |||| |||||||||    
T  27725205 tctcaattgtcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcg 27725106  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  27725105 gcacggttttaccggaaatctctacaaggctcttactgac 27725066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 28780966 - 28781105
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| | || | || || ||| ||||| || |||||||  ||||  |||| |||||||||    
T  28780966 tctcaattatcatggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcg 28781065  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  28781066 ccacggttttaccggcaatctctacaaggctcttactgac 28781105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 295
Target Start/End: Complemental strand, 27593375 - 27593241
Alignment:
Q  161 attctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcgtgatg 260  Q
    ||||||||||||||||||||||||||||||||| ||||||| || ||||  ||||  ||||| || |||||||  || | ||| |||||||||||  | |    
T  27593375 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 27593276  T
Q  261 gttttattgatcatctctacaaggctcttactgac 295  Q
    |||| |  |   |||||||||||||||||||||||    
T  27593275 gtttcaccggcaatctctacaaggctcttactgac 27593241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 27677969 - 27677875
Alignment:
Q  161 attctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    ||||||||||||||||||||||||||||||||| ||||||| || ||||  ||||  ||||| || |||||||| || | ||| |||||||||||    
T  27677969 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatttcagaggaagtgacactcg 27677875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 27338425 - 27338380
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaat 201  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  27338425 tctcaattctcatggctatgcaatcactttcctcttcctcttcaat 27338380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 27399165 - 27399120
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaat 201  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  27399165 tctcaattctcatggctatgcaatcactttcctcttcctcttcaat 27399120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 27678780 - 27678912
Alignment:
Q  163 tctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcgtgatggt 262  Q
    ||||||||||||||||||||||||||||||| ||||||| || ||||  ||||  ||||| || |||||||  || | ||| |||||||||||  | |||    
T  27678780 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggt 27678879  T
Q  263 tttattgatcatctctacaaggctcttactgac 295  Q
    || |  |   |||||||||||||||||||||||    
T  27678880 ttcaccgggaatctctacaaggctcttactgac 27678912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 31284115 - 31284254
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||| || |||| || ||  ||||| || ||||| |  || |  || |||||||||||    
T  31284115 tctcaaatctcatggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaataccaagtattccttagtttcaggggaagtgacactcg 31284214  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      ||||||| |  |   |||||||||||||||||||||||    
T  31284215 gtatggtttcaccggcaatctctacaaggctcttactgac 31284254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 295
Target Start/End: Original strand, 26802272 - 26802408
Alignment:
Q  159 caattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcgtga 258  Q
    ||||| ||||||||||||| || |||||||| ||||||||| | || ||||||| ||| ||||| || |||||||  ||||  |||| |||||||||  |    
T  26802272 caattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggta 26802371  T
Q  259 tggttttattgatcatctctacaaggctcttactgac 295  Q
     |||||||  |   |||||||||||||||||| ||||    
T  26802372 cggttttacgggcaatctctacaaggctcttattgac 26802408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 26655816 - 26655859
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttca 199  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  26655816 tctcaattctcatggctatacaatcaccttcctcatcctcttca 26655859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 26761787 - 26761830
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttca 199  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  26761787 tctcaattctcatggctatacaatcaccttcctcatcctcttca 26761830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 27605071 - 27605032
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctc 195  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  27605071 tctcaattctcatggctatgcaattaccttcctcatcctc 27605032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 26055788 - 26055818
Alignment:
Q  158 tcaattctcatggctatgcaatcaccttcct 188  Q
    |||||||||||||||||||||||||||||||    
T  26055788 tcaattctcatggctatgcaatcaccttcct 26055818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 27706755 - 27706717
Alignment:
Q  163 tctcatggctatgcaatcaccttcctcttcctcttcaat 201  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  27706755 tctcatggctatgcaatcacctttctcttccacttcaat 27706717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 25481604 - 25481633
Alignment:
Q  158 tcaattctcatggctatgcaatcaccttcc 187  Q
    ||||||||||||||||||||||||||||||    
T  25481604 tcaattctcatggctatgcaatcaccttcc 25481633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 25538402 - 25538431
Alignment:
Q  158 tcaattctcatggctatgcaatcaccttcc 187  Q
    ||||||||||||||||||||||||||||||    
T  25538402 tcaattctcatggctatgcaatcaccttcc 25538431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 25579581 - 25579610
Alignment:
Q  158 tcaattctcatggctatgcaatcaccttcc 187  Q
    ||||||||||||||||||||||||||||||    
T  25579581 tcaattctcatggctatgcaatcaccttcc 25579610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 26048707 - 26048736
Alignment:
Q  158 tcaattctcatggctatgcaatcaccttcc 187  Q
    ||||||||||||||||||||||||||||||    
T  26048707 tcaattctcatggctatgcaatcaccttcc 26048736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 26069876 - 26069905
Alignment:
Q  158 tcaattctcatggctatgcaatcaccttcc 187  Q
    ||||||||||||||||||||||||||||||    
T  26069876 tcaattctcatggctatgcaatcaccttcc 26069905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 26075758 - 26075787
Alignment:
Q  158 tcaattctcatggctatgcaatcaccttcc 187  Q
    ||||||||||||||||||||||||||||||    
T  26075758 tcaattctcatggctatgcaatcaccttcc 26075787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 26142727 - 26142756
Alignment:
Q  158 tcaattctcatggctatgcaatcaccttcc 187  Q
    ||||||||||||||||||||||||||||||    
T  26142727 tcaattctcatggctatgcaatcaccttcc 26142756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 26823673 - 26823709
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttc 192  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  26823673 tctcaattctcatggctatgcagtcaacttcctcttc 26823709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 155 - 295
Target Start/End: Complemental strand, 18724433 - 18724293
Alignment:
Q  155 ttctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactc 254  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| | || ||| ||| ||| ||||| || ||||||| ||| |  |||||||||||||    
T  18724433 ttctcaattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactc 18724334  T
Q  255 gtgatggttttattgatcatctctacaaggctcttactgac 295  Q
    || | ||||||| || |||||||||||||||||||||||||    
T  18724333 gtaacggttttactggtcatctctacaaggctcttactgac 18724293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 18699747 - 18699608
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||||||||||||||||||||||||||||||| ||||||||| | || ||| ||| ||| ||||| || ||||||| ||| |  |||| |||||||||    
T  18699747 tctcaattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcg 18699648  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
    ||| ||||||| ||  ||||||||||| ||||||||||||    
T  18699647 tgacggttttactggccatctctacaaagctcttactgac 18699608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 18679914 - 18679775
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||| ||| ||||||||||||||||||||||||| | ||||||| | || ||| ||| ||| ||||| || ||||||| ||| |  ||||||||||||||    
T  18679914 tctctattttcatggctatgcaatcaccttcctcattctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcg 18679815  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
    | | ||||||| || |||||||||||||||||||||||||    
T  18679814 taacggttttactggtcatctctacaaggctcttactgac 18679775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 18655824 - 18655685
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||||| ||||||||| ||||||||||||||| ||||||||| | || ||| ||| ||| ||||| || ||||||| ||| |  ||||||||||||||    
T  18655824 tctcaattttcatggctaggcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcg 18655725  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
    | | ||||||| ||  ||||||||||| ||||||||||||    
T  18655724 taacggttttactgggcatctctacaaagctcttactgac 18655685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 18731851 - 18731712
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||| | || ||| ||| ||| ||||| || ||||||| ||| |  ||||||||||||||    
T  18731851 tctcgattttcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcg 18731752  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
    ||| ||||||| ||  ||||||||||  ||||||||||||    
T  18731751 tgacggttttactggccatctctacagagctcttactgac 18731712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 277 - 138
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    ||||||||||||||||||||||||||||| |||||||||||||| | ||||||| || ||| ||||| || ||||| |  ||||  |||| |||||||||    
T  277 tctcaattctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcg 178  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  177 ccacggttttaccggcaatctctacaaggctcttactgac 138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 7352 - 7491
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    ||||||||||||||||||||||||||||| |||||||||||||| | ||||||| || ||| ||||| || ||||| |  ||||  |||| |||||||||    
T  7352 tctcaattctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcg 7451  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  7452 ccacggttttaccggcaatctctacaaggctcttactgac 7491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 5031 - 4892
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||||||| |||||||| |||||||||||||| ||||||||| | || ||||||| ||| ||||| || |||||||  ||||  |||| |||||||||    
T  5031 tctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcg 4932  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  4931 ccacggttttaccggaaatctctacaaggctcttactgac 4892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 13992 - 13853
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| | || | || || ||| ||||| || |||||||  ||||  |||| |||||||||    
T  13992 tctcaattatcatggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcg 13893  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  13892 ccacggttttaccggcaatctctacaaggctcttactgac 13853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 3782 - 3643
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    |||||||| |||||||||| |||||||||||||| ||||||||| | || ||||||| ||| ||||| || ||||| |  ||||  |||| |||||||||    
T  3782 tctcaattgtcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcg 3683  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  3682 gcacggttttaccggaaatctctacaaggctcttactgac 3643  T

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Target: scaffold0349; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 255
Target Start/End: Complemental strand, 8161 - 8062
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| ||||  |||||| ||| ||||| || |||||||  ||||  |||| |||||||||    
T  8161 tctcaattctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 8062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 14715 - 14576
Alignment:
Q  156 tctcaattctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatacacctaccaggtcttcctcaactttaaaggcagtgacactcg 255  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||| | || ||||||| ||| ||||| || ||| |||  ||||  |||| |||||||||    
T  14715 tctcaattctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcg 14616  T
Q  256 tgatggttttattgatcatctctacaaggctcttactgac 295  Q
      | |||||||  |   |||||||||||||||||||||||    
T  14615 gcacggttttaccggaaatctctacaaggctcttactgac 14576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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