View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_high_52 (Length: 291)
Name: NF3074_high_52
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 242669 - 242936
Alignment:
| Q |
19 |
tctaatccctacatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatatcaaccattgccgcaatca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
242669 |
tctaatccctacatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatctcaaccattgccgctatca |
242768 |
T |
|
| Q |
119 |
cctcatttggttatgtattcatcgcaattggtctttgtcttactgtccttatctcaggtagtttgttcatcacttttctcccttaaattcatagttttat |
218 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
242769 |
cctcgtttggttatgtattcattgcaattggtctttgtcttactgtccttatctcaggtagtttgttgatcacttttctccctcaaattcatagttttat |
242868 |
T |
|
| Q |
219 |
tttatatatgtctacttacaaaggcattttggctaagaacaggaaaaggagcatctaccagtataatc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
242869 |
tttatatatgtctacttacaaaggcattttggctaagaacaggaaaaggagcacctaccagcataatc |
242936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 222721 - 222544
Alignment:
| Q |
21 |
taatccctacatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatatcaaccattgccgcaatcacc |
120 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
222721 |
taatccctatatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatatcaaccattgccgctatcacc |
222622 |
T |
|
| Q |
121 |
tcatttggttatgtattcatcgcaattggtctttgtcttactgtccttatctcaggtagtttgttcatcacttttctc |
198 |
Q |
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| T |
222621 |
tcgtttggttatgtattcattgcagttggcctttgtcttactgtccttatctcgggtaatttgttgatcacttttctc |
222544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 222399 - 222341
Alignment:
| Q |
218 |
ttttatatatgtctacttacaaaggcattttggctaagaacaggaaaaggagcatctac |
276 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |
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| T |
222399 |
ttttatatatgtctacttacaaatgcattttggctaagagcaggaaaaggggcatctac |
222341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 12030522 - 12030365
Alignment:
| Q |
21 |
taatccctacatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatatcaaccattgccgcaatcacc |
120 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||||| |||||| |||| ||||| ||| |
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| T |
12030522 |
taatccctacatgattagttttgggacattgcagattttcttgtctcaaattccaaactttcatgaattgacatggatttcaaccgttgctgcaattacc |
12030423 |
T |
|
| Q |
121 |
tcatttggttatgtattcatcgcaattggtctttgtcttactgtccttatctcaggta |
178 |
Q |
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|| ||||||||||||||||| ||||||| ||||||| ||| || |||||||||||| |
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| T |
12030422 |
tcgtttggttatgtattcattgcaattgctctttgttttaacgttattatctcaggta |
12030365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 51529333 - 51529445
Alignment:
| Q |
21 |
taatccctacatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatatcaaccattgccgcaatcacc |
120 |
Q |
| |
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||||||||||||| ||||||||||||| || |||||||| ||||||||||| || || || || || | |||| ||||||||| |||| || || ||| |
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| T |
51529333 |
taatccctacatgctcggttttgggatctttcagattttattgtctcaaatcccaaatttccataagttaacattgatatcaactgttgctgctattacc |
51529432 |
T |
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| Q |
121 |
tcatttggttatg |
133 |
Q |
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|| |||||||||| |
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| T |
51529433 |
tcttttggttatg |
51529445 |
T |
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