View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_high_54 (Length: 288)

Name: NF3074_high_54
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_high_54
NF3074_high_54
[»] chr5 (8 HSPs)
chr5 (18-109)||(22004480-22004571)
chr5 (8-87)||(19085423-19085501)
chr5 (17-87)||(22009574-22009644)
chr5 (17-87)||(7473535-7473605)
chr5 (17-87)||(9043807-9043877)
chr5 (18-87)||(30442593-30442662)
chr5 (23-87)||(26841010-26841074)
chr5 (17-71)||(30463112-30463167)
[»] chr8 (9 HSPs)
chr8 (35-109)||(5662589-5662663)
chr8 (17-70)||(27541621-27541674)
chr8 (17-87)||(5657776-5657846)
chr8 (17-87)||(14678067-14678137)
chr8 (17-87)||(31100918-31100988)
chr8 (17-70)||(23738662-23738715)
chr8 (17-87)||(24788079-24788149)
chr8 (20-65)||(33689362-33689407)
chr8 (17-70)||(8158466-8158519)
[»] scaffold0096 (1 HSPs)
scaffold0096 (17-109)||(27415-27507)
[»] chr6 (7 HSPs)
chr6 (17-109)||(3065703-3065795)
chr6 (19-87)||(33045477-33045545)
chr6 (19-87)||(30908415-30908483)
chr6 (17-87)||(10092517-10092587)
chr6 (17-87)||(16246707-16246777)
chr6 (17-70)||(4660238-4660291)
chr6 (19-87)||(8976411-8976479)
[»] chr3 (13 HSPs)
chr3 (17-109)||(17681772-17681864)
chr3 (17-109)||(12538659-12538751)
chr3 (19-107)||(47763940-47764028)
chr3 (17-87)||(31685082-31685152)
chr3 (59-109)||(53351958-53352008)
chr3 (17-109)||(53973309-53973402)
chr3 (17-87)||(24761944-24762014)
chr3 (17-87)||(24815920-24815990)
chr3 (17-87)||(37982354-37982424)
chr3 (17-70)||(2549942-2549995)
chr3 (17-70)||(53352824-53352877)
chr3 (19-87)||(19882157-19882225)
chr3 (17-70)||(53027815-53027868)
[»] scaffold0035 (1 HSPs)
scaffold0035 (17-87)||(35068-35138)
[»] chr7 (5 HSPs)
chr7 (17-87)||(1262093-1262163)
chr7 (17-70)||(26910044-26910097)
chr7 (17-87)||(43071428-43071498)
chr7 (17-87)||(48849853-48849923)
chr7 (19-87)||(22007347-22007415)
[»] scaffold0045 (1 HSPs)
scaffold0045 (17-70)||(11697-11750)
[»] scaffold0157 (1 HSPs)
scaffold0157 (17-87)||(13966-14036)
[»] chr4 (3 HSPs)
chr4 (17-87)||(12506441-12506511)
chr4 (17-87)||(29863407-29863477)
chr4 (29-70)||(24260237-24260278)
[»] chr2 (5 HSPs)
chr2 (17-78)||(10328947-10329008)
chr2 (17-87)||(23349026-23349096)
chr2 (17-109)||(24454520-24454612)
chr2 (17-87)||(18355359-18355429)
chr2 (23-87)||(12741699-12741763)
[»] chr1 (1 HSPs)
chr1 (17-87)||(50990912-50990982)
[»] scaffold0596 (1 HSPs)
scaffold0596 (17-70)||(659-712)
[»] scaffold0475 (1 HSPs)
scaffold0475 (21-70)||(7536-7585)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 22004571 - 22004480
Alignment:
Q  18 cttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaatcaaggtggtccgttggatctc 109  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctc 22004480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 19085501 - 19085423
Alignment:
Q  8 gacatcatcacttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |||| ||| ||||    
T  19085501 gacatcat-acttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 19085423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 22009644 - 22009574
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||| ||| ||||    
T  22009644 acttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaa 22009574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 7473605 - 7473535
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||||||| || |||| ||| ||||    
T  7473605 acttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 7473535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 9043807 - 9043877
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||||||| || |||| ||| ||||    
T  9043807 acttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 9043877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 30442662 - 30442593
Alignment:
Q  18 cttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||||||||| || |||| ||| ||||    
T  30442662 cttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 30442593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 26841074 - 26841010
Alignment:
Q  23 atctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| || |||| ||| ||||    
T  26841074 atctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaa 26841010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 30463167 - 30463112
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgc-aaaccctaaacctag 71  Q
    |||||||||||||||||||||||| | ||||| || |||| |||||||||||||||    
T  30463167 acttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaacctag 30463112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 5662589 - 5662663
Alignment:
Q  35 ttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaatcaaggtggtccgttggatctc 109  Q
    |||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||    
T  5662589 ttaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctc 5662663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 27541674 - 27541621
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27541674 acttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 27541621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 5657776 - 5657846
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||| || |||| ||| ||||    
T  5657776 acttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaa 5657846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 14678137 - 14678067
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| ||| ||||    
T  14678137 acttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaa 14678067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 31100988 - 31100918
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||| || |||| ||| ||||    
T  31100988 acttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaa 31100918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 23738662 - 23738715
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  23738662 acttatatctaatctttgttaacattgctaatgactttgcaaaccctaacccta 23738715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 24788149 - 24788079
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||||||||  | |||| ||||||||    
T  24788149 acttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaattagttttggcgccaa 24788079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 33689407 - 33689362
Alignment:
Q  20 tatatctaatctttgttaacattactaatgactttgcaaaccctaa 65  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  33689407 tatatctaatctttgttaacattgctaatgactttgcagaccctaa 33689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 8158466 - 8158519
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    ||||||||||||| |||||||||| | ||||| || ||||||| ||||||||||    
T  8158466 acttatatctaatttttgttaacaatgctaattaccttgcaaaacctaaaccta 8158519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 27415 - 27507
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaatcaaggtggtccgttggatctc 109  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||| ||| |||| |||||  | ||||||||||||    
T  27415 acttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctc 27507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 3065703 - 3065795
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaatcaaggtggtccgttggatctc 109  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||| || |||| ||| |||| |||||  | ||||||||||||    
T  3065703 acttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctc 3065795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 33045545 - 33045477
Alignment:
Q  19 ttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| ||| ||||    
T  33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 33045477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 30908483 - 30908415
Alignment:
Q  19 ttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |||| ||| ||||    
T  30908483 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaa 30908415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 10092517 - 10092587
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||| ||| || |||| ||| ||||    
T  10092517 acttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaa 10092587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 16246707 - 16246777
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||| |||| || |||| ||| ||||    
T  16246707 acttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaa 16246777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 4660291 - 4660238
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||| ||||    
T  4660291 acttatatataatctttgttaacattgctaatgactttgcaaaccctaacccta 4660238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 8976411 - 8976479
Alignment:
Q  19 ttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||| ||| ||||||||||| ||||| ||||||||| || |||| ||| ||||    
T  8976411 ttatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaa 8976479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 17681772 - 17681864
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaatcaaggtggtccgttggatctc 109  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||||||| || |||| ||| |||| ||||| || ||||||||||||    
T  17681772 acttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctc 17681864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 12538751 - 12538659
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaatcaaggtggtccgttggatctc 109  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||||||||| || |||| ||| |||| |||||  | ||||||||||||    
T  12538751 acttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctc 12538659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 47764028 - 47763940
Alignment:
Q  19 ttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaatcaaggtggtccgttggatc 107  Q
    |||||||||||| |  |||||||| ||||| |||||||||| |||||| ||||| | |||||||||||||||||| |||||||||||||    
T  47764028 ttatatctaatcctacttaacattgctaataactttgcaaaacctaaatctagaatttttaggcgccaatcaaggaggtccgttggatc 47763940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 31685082 - 31685152
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || |||| ||| ||||    
T  31685082 acttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 31685152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 53352008 - 53351958
Alignment:
Q  59 accctaaacctagattgtttaggcgccaatcaaggtggtccgttggatctc 109  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53352008 accctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctc 53351958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 53973402 - 53973309
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgcc-aatcaaggtggtccgttggatctc 109  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||||||| || |||| ||| || ||||||||  | ||||||||||||    
T  53973402 acttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctc 53973309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 24762014 - 24761944
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||| || |||||||| ||||||||||||||||||||||||||| || |||| ||| ||||    
T  24762014 acttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 24761944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 24815920 - 24815990
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||| || |||||||| ||||||||||||||||||||||||||| || |||| ||| ||||    
T  24815920 acttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 24815990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 37982354 - 37982424
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||||||| || |||| ||| ||||    
T  37982354 acttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 37982424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 2549942 - 2549995
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  2549942 acttatatctaatcttaattaacattgctaatgactttgcaaaccctaaaccta 2549995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 53352877 - 53352824
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    |||||||||||||| || |||||||| ||||||||||||||||| |||||||||    
T  53352877 acttatatctaatccttcttaacattgctaatgactttgcaaactctaaaccta 53352824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 19882225 - 19882157
Alignment:
Q  19 ttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||| |||||||  ||| |||||||||||||| || |||| ||| ||||    
T  19882225 ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaa 19882157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 53027868 - 53027815
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    |||||||||||||| || |||||| | ||||| ||||| |||||||||||||||    
T  53027868 acttatatctaatccttcttaacactgctaataactttacaaaccctaaaccta 53027815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 35068 - 35138
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| ||| ||||    
T  35068 acttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 35138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 1262093 - 1262163
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| ||| ||||    
T  1262093 acttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 1262163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 26910097 - 26910044
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  26910097 acttatatctaatctttgttaacattgctaataactttgcaaaccctaaaccta 26910044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 43071498 - 43071428
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||||||| || |||| ||| ||||    
T  43071498 acttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 43071428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 48849923 - 48849853
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| |||||||||||| ||| |||||||||| || |||| ||| ||||    
T  48849923 acttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaa 48849853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 22007347 - 22007415
Alignment:
Q  19 ttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||||| ||| || |||| ||| ||||    
T  22007347 ttatatctaatttttgttaacattgctaatgactttacaaaccctaaatctaaatggttttggctccaa 22007415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 11750 - 11697
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11750 acttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 11697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 14036 - 13966
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||  ||| ||||||||    
T  14036 acttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaataatttgggcgccaa 13966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 12506441 - 12506511
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||  ||| ||||||||    
T  12506441 acttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaataatttgggcgccaa 12506511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 29863477 - 29863407
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| || ||||||||||||||| |||||||| || |||| ||| ||||    
T  29863477 acttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaa 29863407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 24260237 - 24260278
Alignment:
Q  29 tctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  24260237 tctttgttaacattgctaatgactttgcaaaccctaacccta 24260278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 10329008 - 10328947
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgttt 78  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||||||| |||||||    
T  10329008 acttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttt 10328947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 23349096 - 23349026
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||||||| || |||| ||| ||||    
T  23349096 acttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 23349026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 24454520 - 24454612
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaatcaaggtggtccgttggatctc 109  Q
    ||||||||||||||||  |||||||| ||||   | ||||||| |||||||||| ||| |||||||||||| ||||| || ||||||||||||    
T  24454520 acttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaacaaggagggccgttggatctc 24454612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 18355429 - 18355359
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||| ||||||||||||||||| |||||||  |||||||||||||||||| || |||| ||| ||||    
T  18355429 acttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 18355359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 12741699 - 12741763
Alignment:
Q  23 atctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||| || |||| ||| ||||    
T  12741699 atctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 12741763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 50990912 - 50990982
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaacctagattgtttaggcgccaa 87  Q
    |||||||||||||||||||||||||| || || ||||||||||||||||||||| || |||| ||| ||||    
T  50990912 acttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaa 50990982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 659 - 712
Alignment:
Q  17 acttatatctaatctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    |||||||||| ||||||||||||||| |||||||  ||||||||||||||||||    
T  659 acttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaaccta 712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 7585 - 7536
Alignment:
Q  21 atatctaatctttgttaacattactaatgactttgcaaaccctaaaccta 70  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| ||||    
T  7585 atatataatctttgttaacattgctaatgactttgcaaaccctaacccta 7536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University