View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3074_high_58 (Length: 272)

Name: NF3074_high_58
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3074_high_58
NF3074_high_58
[»] chr1 (6 HSPs)
chr1 (6-101)||(48043638-48043734)
chr1 (186-253)||(48043874-48043941)
chr1 (6-96)||(48051611-48051701)
chr1 (18-89)||(48056897-48056968)
chr1 (33-100)||(48045485-48045552)
chr1 (146-184)||(48043794-48043832)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 48043638 - 48043734
Alignment:
Q  6 aggagcacagactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttatt-acctagaaccagcagtggaatccc 101  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48043638 aggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattaacctagaaccagcagtggaatccc 48043734  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 48043874 - 48043941
Alignment:
Q  186 aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgct 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48043874 aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgct 48043941  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 48051611 - 48051701
Alignment:
Q  6 aggagcacagactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtgga 96  Q
    |||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  48051611 aggatcacacactacttaaaccttttctgtcaggtcttgcttagacaaatccccaggtttatcaatcttgttacttagaaccagcagtgga 48051701  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 48056897 - 48056968
Alignment:
Q  18 tacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccag 89  Q
    |||||| ||||||| ||||  |||||||||||||||| | ||||||||||||||||||||||| ||||||||    
T  48056897 tacttacatcttttctgtcgtgtcttgcttagacaaagcaccaggtttgtcaatcttattaccaagaaccag 48056968  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 48045485 - 48045552
Alignment:
Q  33 tgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtggaatcc 100  Q
    |||| ||||||||||||||||||   ||||||||||||| |||||||||| |||||||| | ||||||    
T  48045485 tgtcgggtcttgcttagacaaattgtcaggtttgtcaattttattacctaaaaccagcaattgaatcc 48045552  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 48043794 - 48043832
Alignment:
Q  146 ggaattgaatctgagatcacccttatcactccattcttt 184  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  48043794 ggaatcgaatctgagatcacccttatcactccattcttt 48043832  T

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