View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_high_66 (Length: 249)
Name: NF3074_high_66
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 44628175 - 44628406
Alignment:
| Q |
1 |
ctgaccttgacaagatcatattgaagactttggtaattgtttt-tattcttttagattggacatgttatggaatcaaatgcagtggaacaagaaatgttt |
99 |
Q |
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| T |
44628175 |
ctgaccttgacaagatcatattgaagactttggtaattgttttttattcttttagattggacatgttatggaatcaaatgcagtggaacaagaaaccttt |
44628274 |
T |
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| Q |
100 |
gatcactacacatgtatttagattgaatcagtatgctttgatggtgttagtgtttatcgtcaaattgctaaatgctgaaagcgtaatgctgataaatagt |
199 |
Q |
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| T |
44628275 |
gatcactacacatgtatttagattgaatcagtatgctttaatggtgttagtgtttatcgtcaaattgctaaatgctgaaagcgtaatgctgataaatagt |
44628374 |
T |
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| Q |
200 |
cactttctagttaaagctagggagacataatc |
231 |
Q |
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| T |
44628375 |
cactttctagttaaagctagggagacataatc |
44628406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 42388592 - 42388496
Alignment:
| Q |
39 |
gtttttattcttttagattggacatgttatggaatcaaatgcagtggaacaagaaatg--tttgatcactacacatgtatttagattgaatcagtatg |
134 |
Q |
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| T |
42388592 |
gtttttcttcttttagattggacatgttaaggaatcaaatgcagtggaacgaaacatgcttgtgataactacacttgt-tttagattgaatcggtatg |
42388496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 34597529 - 34597432
Alignment:
| Q |
39 |
gtttttattcttttagattggacatgttatggaatcaaatgcagtggaacaagaaatg--tttgatcactacacatgtatttagattgaatcagtatg |
134 |
Q |
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| T |
34597529 |
gtttttcttcttttagattggacatgttaaggaatcaaatgcagtggaacaaaacatgcttgtgataactacacttgtttttagattgaatcggtatg |
34597432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 26081537 - 26081640
Alignment:
| Q |
28 |
ctttggtaattg-tttttattcttttagattggacatgttatggaatcaaatgcagtggaacaagaaatg--tttgatcactacacatgtatttagattg |
124 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||| |||||||||| || |||||||| ||||| | ||||||||| || ||| ||||||||| |
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| T |
26081537 |
ctttggtaattggtttttcgtcttttagattggacatgttaaggaatcaaatccattggaacaaaaaatgcttgtgatcactaaacttgtttttagattg |
26081636 |
T |
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| Q |
125 |
aatc |
128 |
Q |
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|||| |
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|
| T |
26081637 |
aatc |
26081640 |
T |
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