View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_1 (Length: 810)
Name: NF3074_low_1
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 431 - 800
Target Start/End: Original strand, 32708766 - 32709133
Alignment:
| Q |
431 |
gttggtgttgatatatatatcttgcttcttcaaacttatgttcttgctagccatctgtttatttaactgtgttatttctgttctctcccacatatgtaga |
530 |
Q |
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| T |
32708766 |
gttggtgttgatat--atatcttgcttcttcaaacttatgttcttgctagccatctgtttatttaactgtgttatttctgttctctcctacatatgtaga |
32708863 |
T |
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| Q |
531 |
agctattttcctttcttttcgtagttatgttgttggttttggcttcgacttatattggttatttttctaaaggatcagtttctgttaaaattagtttatg |
630 |
Q |
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| T |
32708864 |
agctattttcctttctttttgtagttatgttgttggttttggcttcgacttatattggttatttttctaaaggaccagtttctgttaaaattagtttacg |
32708963 |
T |
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| Q |
631 |
aacctatttcaaaatccacaattagtttagagacctacaaagtatttaaactactttcttannnnnnnnatcattattagtcaaatgttctaatggaggc |
730 |
Q |
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| T |
32708964 |
aacctatttcaaaatccacaattagtttagagacctacaaagtatttaaactactttcttattttttttatcattattagtcaaatgttctaatggaagc |
32709063 |
T |
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| Q |
731 |
gggtaccgaagactgtgaagagaccgttgattcctcagaagatgttaatgagaaaaattctgtttctgtg |
800 |
Q |
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| T |
32709064 |
gggtaccgaagactgtgaagagaccgttgattcctcagaagatgttaatgagaaaaattctgtttctgtg |
32709133 |
T |
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