View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_10 (Length: 580)
Name: NF3074_low_10
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 264
Target Start/End: Complemental strand, 37177123 - 37176865
Alignment:
| Q |
6 |
tctttctcctcctttctcttctattcctcacaccaagagtttatgctataaggattaaattctcaagcccttcttctacttcaagtcatcatgcttttca |
105 |
Q |
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| T |
37177123 |
tctttctcctcctttctcttctattcctcacaccaagagtttatgctataaggattaaattctcaagcccttcttctacttcaagtcatcatgcttttca |
37177024 |
T |
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| Q |
106 |
tattccatttttcaattctccaagcagaagcaaaggtaaagaattcaagtctcagaaacgcaaagtgcctacaggatccaaccctttacacaacaagaga |
205 |
Q |
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| T |
37177023 |
tattccatttttcaattctccaagcagaagcaaaggtaaagaattcaagtctcagaaacgcaaagtgcctacaggatccaaccctttacacaacaagaga |
37176924 |
T |
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| Q |
206 |
tagtttgatttctcatcaggtttttggtggaagaatccattgttcagtagtatagtcac |
264 |
Q |
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| T |
37176923 |
tagtttgatttctcatcaggtttttggtggaagaatccattgttcagtagtatagtcac |
37176865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 325 - 572
Target Start/End: Complemental strand, 37176804 - 37176557
Alignment:
| Q |
325 |
ggtagcataatttaggttgcatttctttgtgatattaattagaaatagttattagttagttagatttgtnnnnnnnnnnnnnnnnnnnnntcttgtacag |
424 |
Q |
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| T |
37176804 |
ggtagcataatttaggttgcatttctttgtgatattaattagaaatagttattagttagttagatttgtagagagactagagagagagagtcttgtacag |
37176705 |
T |
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| Q |
425 |
aaggtaaataggattttgaattttttgatatatgaaagaattatgaatttaatttctctaccttaacaattgtttcctgtttcattgcaacttagaatca |
524 |
Q |
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| T |
37176704 |
aaggtaaataggattttgaattttttgatatatgaaagaattatgaatttaatttctctaccttaacaattgtttcctgtttcattgcaacttagaatca |
37176605 |
T |
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| Q |
525 |
caaaacttaagattgcaattttatgcttcatgctatcaattttcttct |
572 |
Q |
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| T |
37176604 |
caaaacttaagattgcaattttatgcttcatgctatcaattttcttct |
37176557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 36207398 - 36207488
Alignment:
| Q |
119 |
aattctccaagcagaagcaaaggtaaagaattcaagtctcagaaacgcaaagtgcctacaggatccaaccctttacacaacaagagatagt |
209 |
Q |
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| T |
36207398 |
aattctccaatcagcagcagaggtaaagagtttgagtctcagaaacgaagagtacctacaggagccaaccctttacacaataagaaatagt |
36207488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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