View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_11 (Length: 539)
Name: NF3074_low_11
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 51844880 - 51844664
Alignment:
| Q |
11 |
cagagaaagagttgttaacaaaactaatggttcttaacgttggaatttgtaaaagagaatcaatgtcaatttttccagagaggcctaaatcagtaagatg |
110 |
Q |
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| T |
51844880 |
cagagaaagagttgttaacaaaactaatggttcttaacgttggaatttgtaaaagagaatcaatgtcaatttttccagagaggcctaaatcggtaagatg |
51844781 |
T |
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| Q |
111 |
aagacttgagacgacattgtcgaaacaaatgacaccaacccatcttgaagaacatggattttgattaggaagccatgatgcaagagattgcgtgtttgtg |
210 |
Q |
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| T |
51844780 |
aagacttgagatgacattgtcgaaacaaatgacaccaacccatcttgaagaacatggattttgattaggaagccatgatgcaagagattgcgtgtttgtg |
51844681 |
T |
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| Q |
211 |
aaggattgtttgagttt |
227 |
Q |
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| T |
51844680 |
aaggattgtttgagttt |
51844664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 51844587 - 51844506
Alignment:
| Q |
304 |
cgaacagcggccattggcaaccgggaatctgaaacgtcctccggttgtttgtagaaatggaccgctgttcggagagatagag |
385 |
Q |
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| T |
51844587 |
cgaacagcggccattggcaaccgggaatctgaaacgtcctccggttgtttgtagaaatggaccgctgttcggagagatagag |
51844506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 51844413 - 51844371
Alignment:
| Q |
478 |
cttggaattgggtagccacaaacggaaacatgaaagttgtcat |
520 |
Q |
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| T |
51844413 |
cttggaattgggtagccacaaacggaaacatgaaagttgtcat |
51844371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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