View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_12 (Length: 530)
Name: NF3074_low_12
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 70 - 514
Target Start/End: Complemental strand, 20339972 - 20339542
Alignment:
| Q |
70 |
tccgctcacaacatatagaatcaaacagtaacaaaagcctaataacaaaccatcaacagggaatatctaaaagagagaaagagtaacaatatcaaaagac |
169 |
Q |
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| T |
20339972 |
tccgctcacaacatatagaatcaaacagtaacaaaagcctaataacaaaccatcaacagggaatatctaa----------gaataaaaatatcaaaagac |
20339883 |
T |
|
| Q |
170 |
acaacaaaaactccaccaccagcttgagacataactgcagcagacggaagctcacaccgatgcgaaccaaagtcacggaagctcacacccgacactacct |
269 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
20339882 |
acaacaaaaacttcaccaccagcttgctacataactgcagcagacggaagctcacaccgatgcgaaccaaagtaacggaagctcacacccgacgctacct |
20339783 |
T |
|
| Q |
270 |
agaagctgaccaacgttgaagtgtgctgcaacaaccttcaaccatgctgccctcaatacaaccctacaccaccggtaacatacgagggctatgttattaa |
369 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20339782 |
agaagctgaccaacgttgaactgggctgcaacaaccttcaaccgtgctgccctcaatacaaccctacaccaaaggtaacatacgagggctatgttattaa |
20339683 |
T |
|
| Q |
370 |
agatgcaattctgtagcaatatcattgtctagtatagaaaaataaataatgagtgataattcttgctttgcaagaatattcaacatataataattttcaa |
469 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20339682 |
agatgcaattctgtagcaatatcattatctggtatagaaaaataaataatgagtgataattcttgctttgcaagaatattcaacatataataattttcaa |
20339583 |
T |
|
| Q |
470 |
aatatctttatacttcaattatttatatatagataaccaagatct |
514 |
Q |
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| T |
20339582 |
aatatctttatacttcaattatt----tatagataaccaagatct |
20339542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 20373733 - 20373823
Alignment:
| Q |
281 |
aacgttgaagtgtgctgcaacaaccttcaaccatgctgccctcaatacaaccctacaccaccggtaacatacgagggctatgttattaaagat |
373 |
Q |
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| T |
20373733 |
aacgttaaactgtgctgcaacaattttcaaccgtgctgccatgaatacaaccctacaccacaggtaacat--gagggctatgttattaaagat |
20373823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 434
Target Start/End: Original strand, 20140036 - 20140196
Alignment:
| Q |
273 |
agctgaccaacgttgaagtgtgctgcaacaaccttcaaccatgctgccctcaatacaaccctaca---ccaccggtaacatacgagggctatgttattaa |
369 |
Q |
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|||||| |||||||||||||||||||| ||||||||| |||| || | |||||||||||||| |||| ||| |||| ||||| ||||||||||| |
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| T |
20140036 |
agctgatcaacgttgaagtgtgctgcagtaaccttcaattgtgctcccatgaatacaaccctacaatcccacaggtgacat--gagggttatgttattaa |
20140133 |
T |
|
| Q |
370 |
agatgcaattctgtagcaatatcattgtctagtatagaaaaataaataatgagtgataattcttg |
434 |
Q |
| |
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||| ||||| |||||||||||||| | ||||||| ||||||||||| ||| |||||||||| |
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| T |
20140134 |
agagtagattctatagcaatatcattgcccagtatag--aaataaataatcagtaataattcttg |
20140196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 489
Target Start/End: Complemental strand, 20442432 - 20442382
Alignment:
| Q |
440 |
caagaatattcaacatataataattttcaaaa-tatctttatacttcaatt |
489 |
Q |
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| T |
20442432 |
caagaatattcaatatatattaattttcaaaactatctttatacttcaatt |
20442382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 437
Target Start/End: Original strand, 20132831 - 20132974
Alignment:
| Q |
295 |
ctgcaacaaccttcaaccatgctgccctcaatacaaccctacaccaccggtaacatacgagggctatgttattaaagatgcaattctgtagcaatatcat |
394 |
Q |
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|||||||||||||||| |||| || | ||||||||||||||| | ||||||| ||||||||||||||||||| | ||||| |||||||||||| |
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| T |
20132831 |
ctgcaacaaccttcaattgtgctcccatgaatacaaccctacacaaaatgtaacat--gagggctatgttattaaaggttggattctatagcaatatcat |
20132928 |
T |
|
| Q |
395 |
tgtctagtatagaa---aaataaataatgagtgataattcttgctt |
437 |
Q |
| |
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| || | ||||||| ||||||||||| | ||||||||||||| |
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| T |
20132929 |
tatccaatatagaaattaaataaataatccataataattcttgctt |
20132974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 489
Target Start/End: Original strand, 20373897 - 20373947
Alignment:
| Q |
440 |
caagaatattcaacatataataattttca-aaatatctttatacttcaatt |
489 |
Q |
| |
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||||||||||||||||||| |||||| || ||||||||||| ||||||||| |
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| T |
20373897 |
caagaatattcaacatatattaatttgcagaaatatctttaaacttcaatt |
20373947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 15963190 - 15963143
Alignment:
| Q |
273 |
agctgaccaacgttgaagtgtgctgcaacaaccttcaaccatgctgcc |
320 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15963190 |
agctgatcaacgttgaagtgtgctgcaacaactttcaaccatgctgcc |
15963143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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