View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3074_low_13 (Length: 522)
Name: NF3074_low_13
Description: NF3074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3074_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Original strand, 55050640 - 55051147
Alignment:
| Q |
17 |
agaatttcaggtttatacagtaaaacacaaaaaatacaatggacgagtaattcattccaaaatattattataaataaactgatcaaattataaagaactg |
116 |
Q |
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| T |
55050640 |
agaatttcaggtttatacagtaaaaca--aaaaatacaattgacgagtaattcattacaaaatattattataaataaactgatcaaattaaaaagaactg |
55050737 |
T |
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| Q |
117 |
gagtaaagtaaacaggtagcagtac----cgtatca--aa---attaaaattaaaatttcaattgaactagaaaatggcattgaaagtacatgcatggat |
207 |
Q |
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| T |
55050738 |
gagtaaagtaaacaggtagcggtactcagcttagcagtaacgtatcaaaattaaaatttcaattgaactagaaaatggcattgaaagtacatgcatggat |
55050837 |
T |
|
| Q |
208 |
agacaaaaccctaaaaattggaatagtacaattggaggcaaatggaatgaaatcaaatgagcttgaaaggaagaggccaaggagtagacctgggaacttc |
307 |
Q |
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| T |
55050838 |
agacaaaaccctaaaaattggaatagtacaattggaggcaaatggaatgaaatcaaatgagcttgaaaggaagaggccaaggagtagacctgggaacttc |
55050937 |
T |
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| Q |
308 |
aaccttatctttgattcgttcgatcatctgttctctcttcggacgagatttcccatacgatcccttgaatctcttccctttctttgtctttttatcaccg |
407 |
Q |
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| T |
55050938 |
aaccttatctttgattcgttctatcatctgttctctcttcggacgagatttcccatacgatcccttgaatctcttccctttctttgtctttttatcaccg |
55051037 |
T |
|
| Q |
408 |
cgtccgcacactatcggacctgttacgccgccaaaagaagcacaaggtgtctccgtcgacgctcctcttatcaaccaccgtgcagctacggtgcaccgct |
507 |
Q |
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| T |
55051038 |
cgtccgcacactatcggacctgttacgccggcagaagaagcacacggcgtctccgtcgacgctcctcttatcaaccaccgtgcagctacggtgcaccgct |
55051137 |
T |
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| Q |
508 |
tcatctcact |
517 |
Q |
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| T |
55051138 |
tcatcacact |
55051147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 160 - 422
Target Start/End: Original strand, 28388980 - 28389249
Alignment:
| Q |
160 |
aaaatttcaattgaactagaaaatggcattgaaagtacatgcatggata-gacaaaaccctaaaaattggaatagtacaattggaggcaaat-ggaatga |
257 |
Q |
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|||||||| |||||| || ||||||||| |||||||||||| || | || || |||||||||||||| ||||||||| ||||| || ||||| || |||| |
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| T |
28388980 |
aaaatttctattgaaatataaaatggcaatgaaagtacatgtatcgttatgaaaaaaccctaaaaatgggaatagtagaattgaagacaaataggtatga |
28389079 |
T |
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| Q |
258 |
aatcaaatgagcttgaaaggaagaggccaaggagtagacctgggaacttcaaccttatctttgattcgttcgatcatctgttctctcttcg-----gacg |
352 |
Q |
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| T |
28389080 |
aatcaaatgagcttgaaaagaagaggccaaggagtagatctgggaacttcaaccttatctttgattcgtttgatcatatgttctctcttctcttcagacg |
28389179 |
T |
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| Q |
353 |
agatttcccatacgatcccttgaatctcttccctttctttgtctttttatcaccgcgtccgcacactatc |
422 |
Q |
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| T |
28389180 |
agatttcccatacgatgccttgaatatcttccctttctttgtccttttatcaccgcgtccgcacattatc |
28389249 |
T |
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